Section: Dissemination

Teaching - Supervision - Juries

Teaching

• L. Noé, Bioinformatics, 54h, M1 (master “Génomique Protéomique”, univ. Lille 1)

• L. Noé, Networks, 42h, L3 (licence “Computer science”, univ. Lille 1)

• M. Pupin, M. Salson, Introduction to programming (OCaml), 96h, L1 (licence “Computer science”, univ. Lille 1)

• M. Salson, Coding and information theory, 63h, L2 (licence “Computer science”, univ. Lille 1)

• J.-S. Varré Web programming, 36h, L2 (licence “Computer Science”, univ. Lille 1)

• J.-S. Varré Programming with Caml, 36h, L2 (licence “Sciences for Engineers”, univ. Lille 1)

• J.-S. Varré Algorithms and Data structures, 50h, L2 (licence “Computer science”, univ. Lille 1)

• J.-S. Varré, System, 36h, L3 (licence “Computer science”, univ. Lille 1)

• M. Salson, C programming, 42h, L3 (licence “Computer science”, univ. Lille 1)

• M. Pupin, M. Salson Bioinformatics, 100h, M1 (master “Biology and Biotechnologies”, univ. Lille 1)

• S. Blanquart, Algorithms and applications in bioinformatics, 24h, M1 (master “Computer Science”, univ. Lille 1)

• V. Leclère Bioinformatics, 50h, M2 (master “Transformation Valorisation Industrielles des Agro-ressources”, univ. Lille 1)

• M. Pupin, J.-S. Varré Computational biology, 30h, M2 (master “Modèles complexes, algorithmes et données”, univ. Lille 1)

• S. Blanquart, Methods in phylogenetics, 4h, M2 (master “Ecology Environment”, univ. Lille 1)

• M. Giraud, Algorithms for RNA Analysis, 12h, M2 (master “Bioinformatique et Modélisation”, univ. Paris 6)

• M. Salson, Skeptical thinking, 14h, M2 (master “journalist and scientist”, univ. Lille1, ESJ)

• J.-S. Varré, ISN - Computer science for secondary school, 20h, second-level teachers.

Supervision

• PhD in progress: C. Vroland, Indexing data for microRNA and microRNA target site identification in genomes, 2012/10/01, H. Touzet, V. Castric (GEPV), M. Salson

• PhD in progress: T. Rocher, Indexing VDJ recombinations in lymphocytes for leukemia follow-up, 2014/11/01, J.-S. Varré, M. Giraud, M. Salson

• PhD in progress: P. Pericard, Methods for taxonomic assignation in metagenomics, 2013/11/01, H. Touzet, S. Blanquart.

• PhD in progress: C. Saad, Caractérisation des erreurs de séquençage non aléatoires, application aux mosaïques et tumeurs hétérogènes, 2014/10/01, M.-P. Buisine, H. Touzet, J. Leclerc, L. Noé, M. Figeac

• PhD in progress: Y. Dufresne, Modèles et algorithmes pour la gestion de la biodiversité des peptides non-ribosomiques et la mise en évidence de nouveaux peptides bioactifs, 2013/10/01, M. Pupin, L. Noé

• PhD in progress: L. Siegwald, Bionformatic analysis of Ion Torrent metagenomic data, 2014/01/03, H. Touzet, Y. Lemoine (Institut Pasteur de Lille)

Juries

• Member of the thesis committee of Jérémie Gilliot (Université Lille 1, J.-S. Varré)

• Member of the thesis committee of Trong-Tuan Vu (Université Lille 1, J.-S. Varré)

• Member of the thesis committee of Audrey Vingadassalon (Université Paris Sud, V. Leclère)

• Member of the thesis committee of Safwan Saker (Université de Toulouse, V. Leclère)

• Member of the thesis committee of Valentin Wücher (Université Rennes 1, H. Touzet)

• Member of the thesis committee Susan Higashi (Université Lyon 1, H. Touzet)

• Member of the thesis committee of Mateusz Pawlik (Freie Universität Bozen, H. Touzet)

• Member of the tenure committee of Sylvie Hamel (UQAM, H. Touzet)

• Member of the national Inria CR1 hiring committee (M. Giraud)

• Member of the CR2 hiring committee of Inria Rocquencourt (M. Giraud)

• Member of the McF 27MC1727 committee (Université Pierre et Marie Curie, L. Noé)

• Member of the McF 27/64, poste 0916 committee (Université de Reims, M. Pupin)

• Member of the hiring committee McF of Université Lyon 1 (H. Touzet)

Administrative activities

• National representative (chargée de mission) for the Institute for Computer Sciences (INS2I) in CNRS (CNRS: National Center for Scientific Research). She is more specifically in charge of relationships between the Institute and life sciences (H. Touzet)

• Member of the Inria evalution commitee (M. Giraud)

• Member of the Inria local committee for scientific grants (A. Ouangraoua)

• Member of the Inria local committee for technology development (M. Pupin)

• Member of the Gilles Kahn PhD award national commitee (H. Touzet)

• Member of the national ANR evaluation committe CES19 (H. Touzet)

• Member of CSS MBIA (mathematics, bioinformatics and artificial intelligence) at INRA (H. Touzet)

• Member of the executive council of the IFB, Institut Français de Bioinformatique, (M.  Pupin)

• Member of CUB Inria Lille Nord Europe (S. Blanquart).

• Head of PPF bioinformatics – University Lille 1 (H. Touzet)

• Head of Bilille, Lille bioinformatics platform (M. Pupin)

• Head of IFB-NE (pôle Nord-Est de l'Institut Français de Bioinformatique), a cluster of 4 bioinformatics platforms (M. Pupin)

• Member of UFR IEEA council (M. Pupin)

• Member of UFR Biologie council (V. Leclère)

• Head of the GIS department (Statistics and Computer Sciences) of Polytech'Lille (S. Janot)

• Head of the master “Transformation Valorisation Industrielles des Agro-ressources”, univ. Lille 1 (V. Leclère)

• Head of the master “Modèles complexes, algorithmes et données”, univ. Lille 1 (J.-S. Varré)

• Member of the ProBioGEM Laboratory council (V. Leclère)

• Member of the ProBioGEM scientific committee (V. Leclère)

• Member of the scientific operational committee of Xperium, Univ. Lille 1 (V. Leclère)

• Member of the LIFL Laboratory council (L. Noé, H. Touzet)

• Head of the thematic group "Modeling for Life Sciences" of CRIStAL and member of the scientific council of CRIStAL (J.-S. Varré)