EN FR
EN FR


previous Previous | up Home


Bibliography

Major publications by the team in recent years
  • 1C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.

    DRUM: A New Framework for Metabolic Modeling under Non-Balanced Growth. Application to the Carbon Metabolism of Unicellular Microalgae, in: PLoS ONE, August 2014, vol. 9, no 8, e104499. [ DOI : 10.1371/journal.pone.0104499 ]

    https://hal.inria.fr/hal-01097327
  • 2O. Bernard.

    Hurdles and challenges for modelling and control of microalgae for CO2 mitigation and biofuel production, in: Journal of Process Control, 2011, vol. 21, no 10, pp. 1378–1389. [ DOI : 10.1016/j.jprocont.2011.07.012 ]

    http://hal.inria.fr/hal-00848385
  • 3V. Calcagno, F. Grognard, F. M. Hamelin, E. Wajnberg, L. Mailleret.

    The functional response predicts the effect of resource distribution on the optimal movement rate of consumers, in: Ecology Letters, December 2014, vol. 17, no 12, pp. 1570-1579. [ DOI : 10.1111/ele.12379 ]

    https://hal.inria.fr/hal-01084299
  • 4M. Chaves, E. Farcot, J.-L. Gouzé.

    Probabilistic approach for predicting periodic orbits in piecewise affine differential models, in: Bulletin of Mathematical Biology, 2013, vol. 75, no 6, pp. 967-987. [ DOI : 10.1007/s11538-012-9773-6 ]

    http://hal.inria.fr/hal-00828847
  • 5F. Fabre, E. Rousseau, L. Mailleret, B. Moury.

    Durable strategies to deploy plant resistance in agricultural landscapes, in: New Phytologist, 2012, vol. 196, pp. 1064-1075.

    http://dx.doi.org/10.1111/j.1469-8137.2011.04019.x
  • 6L. Mailleret, F. Grognard.

    Global stability and optimisation of a general impulsive biological control model, in: Mathematical Biosciences, 2009, vol. 221, no 2, pp. 91-100.

    http://dx.doi.org/10.1016/j.mbs.2009.07.002
  • 7F. Mairet, O. Bernard, P. Masci, T. Lacour, A. Sciandra.

    Modelling neutral lipid production by the microalga Isochrysis affinis galbana under nitrogen limitation, in: Biores. Technol., 2011, vol. 102, pp. 142-149.

    http://dx.doi.org/10.1016/j.biortech.2010.06.138
  • 8F. Mazenc, O. Bernard.

    Interval observers for linear time-invariant systems with disturbances, in: Automatica, January 2011, vol. 47, no 1, pp. 140-147. [ DOI : 10.1016/j.automatica.2010.10.019 ]

    http://hal.inria.fr/hal-00555464
  • 9M. Moisan, O. Bernard, J.-L. Gouzé.

    Near optimal interval observers bundle for uncertain bioreactors, in: Automatica, January 2009, vol. 45, no 1, pp. 291–295. [ DOI : 10.1016/j.automatica.2008.07.006 ]

    https://hal.archives-ouvertes.fr/hal-01109396
  • 10L. Tournier, M. Chaves.

    Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics, in: Automatica, 2013, vol. 49, no 4, pp. 884-893. [ DOI : 10.1016/j.automatica.2013.01.015, ]

    http://hal.inria.fr/hal-00848450
Publications of the year

Doctoral Dissertations and Habilitation Theses

  • 11I. Belgacem.

    Modelling, analysis and control of biological networks, Université Nice Sophia-Antipolis, March 2015.

    https://hal.inria.fr/tel-01243874
  • 12H. Bonnefond.

    Continuous improvement of microalgae for bioenergy production by selection pressure, Université Pierre et Marie Curie, December 2015.
  • 13T. Morel Journel.

    Introduction strategies for organisms in spatially structures envrionments, Université Nice Sophia Antipolis, December 2015.

    https://hal.inria.fr/tel-01241402

Articles in International Peer-Reviewed Journals

  • 14C. Baroukh, R. Muñoz-Tamayo, O. Bernard, J.-P. Steyer.

    Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production, in: Current Opinion in Biotechnology, 2015, vol. 33, pp. 198-205. [ DOI : 10.1016/j.copbio.2015.03.002 ]

    https://hal.archives-ouvertes.fr/hal-01163456
  • 15C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.

    A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production, in: Metabolic Engineering, 2015, vol. 30, pp. 49-60. [ DOI : 10.1016/j.ymben.2015.03.019 ]

    https://hal.archives-ouvertes.fr/hal-01163453
  • 16T. Bayen, F. Mairet, P. Martinon, M. Sebbah.

    Analysis of a periodic optimal control problem connected to microalgae anaerobic digestion, in: Optimal Control Applications and Methods, November 2015, 24 p. [ DOI : 10.1002/oca.2127 ]

    https://hal.archives-ouvertes.fr/hal-00860570
  • 17T. Bayen, M. Mazade, F. Mairet.

    Analysis of an optimal control problem connected to bioprocesses involving a saturated singular arc, in: Discrete and Continuous Dynamical Systems - Series B, January 2015, vol. 20, no 1, pp. 39-58. [ DOI : 10.3934/dcdsb.2015.20.39 ]

    https://hal.archives-ouvertes.fr/hal-00879385
  • 18P. Bernhard.

    Evolutionary Dynamics of the Handicap Principle: An Example, in: Dynamic Games and Applications, 2015, vol. 5, no 2, pp. 214-227. [ DOI : 10.1007/s13235-014-0108-0 ]

    https://hal.inria.fr/hal-01090629
  • 19Q. Béchet, P. Chambonnière, A. Shilton, G. Guizard, B. Guieysse.

    Algal productivity modeling: A step toward accurate assessments of full-scale algal cultivation, in: Biotechnology and Bioengineering, May 2015, vol. 112, no 5, pp. 987-996. [ DOI : 10.1002/bit.25517 ]

    https://hal.inria.fr/hal-01253774
  • 20Q. Béchet, I. Feurgard, B. Guieysse, F. Lopes.

    The colorimetric assay of viability for algae (CAVA): a fast and accurate technique, in: Journal of Applied Phycology, 2015, vol. 27, no 6, pp. 2289-2297.

    https://hal.inria.fr/hal-01096355
  • 21A. Carta, M. Chaves, J.-L. Gouzé.

    Continuous-switch piecewise quadratic models of biological networks: Application to bacterial growth, in: Automatica, 2015. [ DOI : 10.1016/j.automatica.2015.07.031 ]

    https://hal.archives-ouvertes.fr/hal-01231368
  • 22P. Collet, A. Hélias, L. Lardon, J.-P. Steyer, O. Bernard.

    Recommendations for Life Cycle Assessment of algal fuels, in: Applied Energy, September 2015, vol. 154, pp. 1089–1102. [ DOI : 10.1016/j.apenergy.2015.03.056 ]

    https://hal.inria.fr/hal-01247073
  • 23C. Combe, P. Hartmann, S. Rabouille, A. Talec, O. Bernard, A. Sciandra.

    Long-term adaptive response to high-frequency light signals in the unicellular photosynthetic eukaryote Dunaliella salina, in: Biotechnology and Bioengineering, January 2015, vol. 112, no 6, pp. 1111–1121. [ DOI : 10.1002/bit.25526 ]

    https://hal.inria.fr/hal-01102019
  • 24N. El Farouq, P. Bernhard.

    Proportional Transaction Costs in the Robust Control Approach to Option Pricing: The Uniqueness Theorem, in: Applied Mathematics and Optimization, 2015, vol. 72, no 2, pp. 187-202. [ DOI : 10.1007/s00245-014-9276-y ]

    https://hal.inria.fr/hal-01090616
  • 25F. Fabre, E. Rousseau, L. Mailleret, B. Moury.

    Epidemiological and evolutionary management of plant resistance: optimizing the deployment of cultivar mixtures in time and space in agricultural landscapes, in: Evolutionary Applications, December 2015, vol. 8, no 10, pp. 919–932. [ DOI : 10.1111/eva.12304 ]

    https://hal.inria.fr/hal-01239676
  • 26B. Facon, L. Mailleret, D. Renault, L. Roques.

    Processus d’invasions biologiques : de l’approche descriptive à l’approche prédictive, in: Revue d'Ecologie, Terre et Vie, 2015, vol. 70, no 12, pp. 110-113.

    https://hal.inria.fr/hal-01239839
  • 27B. Ghosh, F. Grognard, L. Mailleret.

    Natural enemies deployment in patchy environments for augmentative biological control, in: Applied Mathematics and Computation, 2015, vol. 266, no 1, pp. 982-999. [ DOI : 10.1016/j.amc.2015.06.021 ]

    https://hal.archives-ouvertes.fr/hal-01171118
  • 28F. Grognard, P. Masci, E. Benoît, O. Bernard.

    Competition between phytoplankton and bacteria: exclusion and coexistence, in: Journal of Mathematical Biology, 2015, vol. 70, no 5, pp. 959-1006. [ DOI : 10.1007/s00285-014-0783-x ]

    https://hal.inria.fr/hal-00968182
  • 29J. Jimenez, E. Latrille, J. Harmand, D. Gaida, C. Wolf, F. Mairet, O. Bernard, V. Alcaraz-Gonzalez, H. Mendez-Acosta, D. Zitomer, D. Totzke, H. Spanjers, F. Jacobi, A. Guwy, R. Dinsdale, S. Mazhegrane, G. Ruiz-Filippi, A. Seco, T. Ribeiro, A. Pauss, J.-P. Steyer.

    Instrumentation and control of anaerobic digestion processes: a review and some research challenges, in: Reviews in Environmental Science and Biotechnology, October 2015, vol. 14, pp. 615-648. [ DOI : 10.​1007/​s11157-015-9382-6 ]

    https://hal.inria.fr/hal-01256735
  • 30F. Mairet, J.-L. Gouzé.

    Hybrid Control of a Bioreactor with Quantized Measurements, in: IEEE Transactions on Automatic Control, 2015, vol. pp, no 99. [ DOI : 10.1109/TAC.2015.2471735 ]

    https://hal.inria.fr/hal-01239387
  • 31F. Mairet, R. Muñoz-Tamayo, O. Bernard.

    Adaptive control of light attenuation for optimizing microalgae production, in: Journal of Process Control, 2015, vol. 30, pp. 117-124. [ DOI : 10.1016/j.jprocont.2015.03.010 ]

    https://hal.archives-ouvertes.fr/hal-01163455
  • 32T. Morel Journel, X. Fauvergue, E. Lombaert, L. Mailleret, T. Malausa, N. Ris, E. Vercken.

    De l’utilisation de microcosmes pour le test d’hypothèses en biologie de l’invasion, in: Revue d'Ecologie, Terre et Vie, 2015, vol. 70, no 12, pp. 16-27.

    https://hal.inria.fr/hal-01239846
  • 33T. Morel-Journel, P. Girod, L. Mailleret, A. Auguste, A. Blin, E. Vercken.

    The highs and lows of dispersal: how connectivity and initial population size jointly shape establishment dynamics in discrete landscapes, in: Oikos, October 2015. [ DOI : 10.1111/oik.02718 ]

    https://hal.inria.fr/hal-01239674
  • 34A. Nikolaou, P. Hartmann, A. Sciandra, B. Chachuat, O. Bernard.

    Dynamic coupling of photoacclimation and photoinhibition in a model of microalgae growth, in: Journal of Theoretical Biology, November 2015, vol. 390, no 61–72. [ DOI : 10.1016/j.jtbi.2015.11.004 ]

    https://hal.inria.fr/hal-01247049
  • 35D. A. Oyarzún, M. Chaves.

    Design of a bistable switch to control cellular uptake, in: Journal of the Royal Society Interface, 2015, vol. 12, no 113, 20150618. [ DOI : 10.1098/rsif.2015.0618 ]

    https://hal.archives-ouvertes.fr/hal-01242146
  • 36B. Perrier, C. Crampon, O. Guézet, C. Simon, F. Maire, O. Lépine, J. Pruvost, P. Lozano, O. Bernard, E. Badens.

    Production of a methyl ester from the microalgae Nannochloropsis grown in raceways on the French west coast, in: Fuel, August 2015, vol. 153, pp. 640–649. [ DOI : 10.1016/j.fuel.2015.03.011 ]

    https://hal.inria.fr/hal-01247077
  • 37C. Poignard, M. Chaves, J.-L. Gouzé.

    Periodic oscillations for non monotonic smooth negative feedback circuits, in: SIAM Journal on Applied Dynamical Systems, 2016, to appear.

    https://hal.archives-ouvertes.fr/hal-01242157
  • 38J. Rumin, H. Bonnefond, B. Saint-Jean, C. Rouxel, A. Sciandra, O. Bernard, J.-P. Cadoret, G. Bougaran.

    The use of fluorescent Nile red and BODIPY for lipid measurement in microalgae, in: Biotechnology for Biofuels, 2015, vol. 8, no 1, 16 p. [ DOI : 10.1186/s13068-015-0220-4 ]

    https://hal.inria.fr/hal-01247087
  • 39V. Turon, C. Baroukh, E. Trably, E. Latrille, E. Fouilland, J.-P. Steyer.

    Use of fermentative metabolites for heterotrophic microalgae growth: Yields and kinetics, in: Bioresource Technology, January 2015, vol. 175, pp. 342-349. [ DOI : 10.1016/j.biortech.2014.10.114 ]

    https://hal.inria.fr/hal-01253781
  • 40E. Vercken, X. Fauvergue, N. Ris, D. Crochard, L. Mailleret.

    Temporal autocorrelation in host density increases establishment success of parasitoids in an experimental system, in: Ecology and Evolution, July 2015, vol. 5, no 13, pp. 2684–2693. [ DOI : 10.1002/ece3.1505 ]

    https://hal.inria.fr/hal-01239677

International Conferences with Proceedings

  • 41S. Casagranda, D. Ropers, J.-L. Gouzé.

    Model reduction and process analysis of biological models, in: 23th Mediterranean Conference on Control and Automation (MED), Torremolinos, Spain, June 2015. [ DOI : 10.1109/MED.2015.7158908 ]

    https://hal.inria.fr/hal-01239356
  • 42G. M. Grimaud, V. Le Guennec, S.-D. Ayata, F. Mairet, A. Sciandra, O. Bernard.

    Modelling the effect of temperature on phytoplankton growth across the global ocean, in: 8th Vienna International Conference on Mathematical Modelling — MATHMOD 2015, Vienna, Austria, 2015. [ DOI : 10.1016/j.ifacol.2015.05.059 ]

    https://hal.inria.fr/hal-01245890

National Conferences with Proceedings

  • 43E. Rousseau, F. Fabre, J. Coville, L. Mailleret, A. Palloix, R. Senoussi, F. Grognard, B. Moury.

    Joint estimation of effective population sizes and selection coefficients from time-sampled data: a case study on virus populations exposed to plant resistance, in: Rencontres de Virologie Végétale (RVV), Aussois, France, 2015.

    https://hal.archives-ouvertes.fr/hal-01240376
  • 44E. Rousseau, F. Fabre, J. Coville, L. Mailleret, A. Palloix, R. Senoussi, F. Grognard, B. Moury.

    Joint estimation of effective population sizes and selection coefficients from time-sampled data: a case study on virus populations submitted to plant resistance, in: 9e Colloque de la Société Française de Phytopathologie, Colmar, France, 2015.

    https://hal.archives-ouvertes.fr/hal-01240375

Conferences without Proceedings

  • 45N. Go, C. Belloc, C. Bidot, S. Touzeau.

    Towards a better understanding of the within-host dynamics to PRRSv: insights from modelling approach, in: International Porcine Reproductive And Respiratory Syndrome Congress, Gand, Belgium, June 2015, Poster.

    https://hal.inria.fr/hal-01237154
  • 46N. Go, C. Belloc, C. Bidot, S. Touzeau.

    Towards an exploration of PRRSv vaccine efficiency in silico, in: European Symposium of Porcine Health Management, Nantes, France, April 2015, Poster.

    https://hal.inria.fr/hal-01237151
  • 47J.-L. Gouzé.

    Contrôle hybride d'un bioréacteur avec des mesures discrètes, in: 35ème Colloque de la Société Francophone de Biologie Théorique, Poitiers, France, June 2015.

    https://hal.inria.fr/hal-01256722
  • 48J.-L. Gouzé, F. Mairet, J. A. Sepulchre.

    Control of bio-conversion of polymeric substrate in the chemostat, in: FOSBE, Boston, United States, August 2015.

    https://hal.inria.fr/hal-01245515
  • 49G. M. Grimaud, F. Mairet, S.-D. Ayata, A. Sciandra, O. Bernard.

    A simple Adaptive Dynamics model to study the effect of global warming on marine phytoplankton, in: Mathematical Models in Ecology and Evolution, Paris, France, 2015, Poster.

    https://hal.inria.fr/hal-01245900
  • 50F. M. Hamelin, A. Bisson, M. L. Desprez Loustau, F. Fabre, L. Mailleret.

    Temporal niche differentiation of closely related parasite species sharing the same plant host. Oak powdery mildew as a case study, in: Models in Population Dynamics and Ecology (MPDE2015), Nitteroi, Brazil, August 2015.

    https://hal.inria.fr/hal-01239834
  • 51T. Morel-Journel, C. Rais Assa, L. Mailleret, E. Vercken.

    It’s all about connections: hubs and invasions in habitat networks, in: Annual Meeting of the Ecological Society of America, Baltimore, United States, August 2015.

    https://hal.inria.fr/hal-01239829
  • 52C. Poignard.

    Discrete synchronization of massively coupled systems using hierarchical couplings, in: SIAM Conference on Applications of Dynamical Systems, Snowbird, United States, May 2015.

    https://hal.inria.fr/hal-01256727
  • 53E. Rousseau, F. Fabre, J. Coville, L. Mailleret, A. Palloix, R. Senoussi, F. Grognard, B. Moury.

    Estimation of genetic drift and selection from next generation sequencing time-sampled data, in: SMBE Satellite meeting SMBEBA 2015, Investigating biological adaptation with NGS: data and models, Leicester, United Kingdom, 2015.

    https://hal.archives-ouvertes.fr/hal-01240378

Scientific Books (or Scientific Book chapters)

  • 54O. Bernard, F. Mairet, B. Chachuat.

    Modelling of Microalgae Culture Systems with Applications to Control and Optimization, in: Advances in Biochemical Engineering/Biotechnology, 2015, vol. Microalgae Biotechnology, no 153, pp. 59-87. [ DOI : 10.1007/10_2014_287 ]

    https://hal.inria.fr/hal-01245875
  • 55P. Bernhard.

    Linear Quadratic Zero-Sum Two-Person Differential Games, in: Encyclopaedia of Systems and Control, Springer-Verlag, 2015, 6 p. [ DOI : 10.1007/978-1-4471-5102-9_29-1 ]

    https://hal.inria.fr/hal-01215550
  • 56P. Bernhard.

    Pursuit-Evasion Games and Zero-sum Two-person Differential Games, in: Encyclopaedia of Systems and Control, Springer-Verlag, 2015, 8 p. [ DOI : 10.1007/978-1-4471-5102-9_270-1 ]

    https://hal.inria.fr/hal-01215556

Internal Reports

  • 57N. Arsapin.

    Modélisation de l'impact des hautes températures sur les microalgues, Université du Sud Toulon Var, July 2015, M2 internship report.

    https://hal.inria.fr/hal-01256661
  • 58V. A. Bernal Arzola.

    Calibration of Personalized Patient Pharmacokinetic Models, Université de Nice Sophia Antipolis, September 2015, M2 Mathsmod Internship report.

    https://hal.inria.fr/hal-01245507
  • 59M. Bonneault.

    Conception et étude d’un modèle de gestion durable des variétés de plantes résistantes aux virus dans un paysage agricole, INSA Lyon, August 2015, 2nd year engineering internship report.

    https://hal.inria.fr/hal-01253974
  • 60M. Caïa.

    Modélisation de la production de biomasse de microalgues dans des bassins sous serres , ENSAT, August 2015, 3rd year engineering internship report.

    https://hal.inria.fr/hal-01256684
  • 61T. Lecieux.

    Réponse physiologique d'une cyanobactérie à la température, Master d’Océanographie – Spécialité Biologie Ecologie Marine, Université Aix-Marseille, June 2015, M2 internship report.

    https://hal.inria.fr/hal-01256639
  • 62Y. Lie.

    Réduction de la taille des antennes photosynthétiques d'une microalgue par pression de séléction, ENSAT, August 2015, 3rd year engineering internship report.

    https://hal.inria.fr/hal-01256668
  • 63M. Mercat.

    Évolution de la virulence chez un nématode phytoparasite : optimisation et analyse de sensibilité des stratégies de déploiement temporel de plantes résistantes, Université de Rennes 1, June 2015, 22 p, M1 internship report.

    https://hal.inria.fr/hal-01255275
  • 64P. Moussion.

    Modélisation de la production de microalgues sous serre photovoltaique, ENSAT, August 2015, 3rd year engineering internship report.

    https://hal.inria.fr/hal-01256680
  • 65R. Tching Chi Yen.

    Modélisation de l’interaction entre gènes pour évaluer la durabilité de résistances variétales, INSA Lyon, August 2015, 2nd year engineering internship report.

    https://hal.inria.fr/hal-01255278

Scientific Popularization

  • 66J. Roux, J.-L. Gouzé, P. Hofman.

    Intraclonal heterogeneity in tumors and its impact on precision medicine, in: médecine/sciences, January 2015, vol. 31, no 1. [ DOI : 10.1051/medsci/20153101009 ]

    https://hal.inria.fr/hal-01259249
  • 67T. Vieville, S. Boldo, F. Masseglia, P. Bernhard.

    « Structures : organisation, complexité, dynamique » des mot-clés au sens inattendu, April 2015, Article de vulgarisation sur pixees.fr.

    https://hal.inria.fr/hal-01238442

Other Publications

  • 68S. Almeida, M. Chaves, J.-L. Gouzé, F. Delaunay.

    Modeling and coupling biorhythms, November 2015, 2nd Labex SIGNALIFE Meeting, Poster.

    https://hal.archives-ouvertes.fr/hal-01242199
  • 69E. Rousseau, F. Fabre, J. Coville, L. Mailleret, A. Palloix, R. Senoussi, B. Moury, F. Grognard.

    Joint estimation of the strength of genetic drift and selection from next generation sequencing time-sampled data : a case study on the adaptation of virus populations to host plant resistance, December 2015, working paper or preprint.

    https://hal.archives-ouvertes.fr/hal-01240377
References in notes
  • 70N. Bajeux, F. Grognard, L. Mailleret.

    Introduction strategies for biological control agents subject to Allee effects, in: 21st International Symposium on Mathematical Theory of Networks and Systems, Grogningen, Netherlands, July 2014.

    https://hal.inria.fr/hal-00968180
  • 71N. Bajeux, F. Grognard, L. Mailleret.

    Augmentative biocontrol when natural enemies are subject to Allee effects, 2015, submitted.
  • 72C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.

    A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae, in: Computer Applied to Biotechnology, Mumbai, India, December 2013.

    http://hal.inria.fr/hal-00856042
  • 73T. Bayen, F. Mairet.

    Optimization of the separation of two species in a chemostat, in: Automatica, April 2014, vol. 50, no 4, pp. 1243-1248. [ DOI : 10.1016/j.automatica.2014.02.024 ]

    https://hal.archives-ouvertes.fr/hal-00817147
  • 74T. Bayen, F. Mairet, P. Martinon, M. Sebbah.

    Analysis of a periodic optimal control problem connected to microalgae anaerobic digestion, in: Optimal Control Applications and Methods, June 2014, 24 p. [ DOI : 10.1002/oca.2127 ]

    https://hal.archives-ouvertes.fr/hal-00860570
  • 75T. Bayen, F. Mairet, M. Mazade.

    Optimal feeding strategy for the minimal time problem of a fed-batch bioreactor with mortality rate, Inria Sophia Antipolis, 2012.

    https://hal.archives-ouvertes.fr/hal-00759058
  • 76O. Bernard.

    TELEMAC Deliverable 3.4: Final version of the Telemac advanced control module, 2004.
  • 77O. Bernard.

    La production de micro-algues sous serre photovoltaique : évolution ou révolution ?, in: Revue de l'Energie, November 2014, vol. 621, pp. 385-392.

    https://hal.inria.fr/hal-01101142
  • 78O. Bernard, B. Rémond.

    Validation of a simple model accounting for light and temperature effect on microalgal growth, in: Bioresource Technology, 2012, vol. 123, pp. 520-527. [ DOI : 10.1016/j.biortech.2012.07.022 ]

    http://hal.inria.fr/hal-00848389
  • 79O. Bernard, J. Sainte-Marie, B. Sialve, J.-P. Steyer.

    Hydrodynamics-Biology Coupling for Algae Culture and Biofuel Production, in: ERCIM News, 2013, vol. 92, 47 p.

    http://hal.inria.fr/hal-00850370
  • 80V. Calcagno, F. Grognard, F. M. Hamelin, E. Wajnberg, L. Mailleret.

    The functional response predicts the effect of resource distribution on the optimal movement rate of consumers, in: Ecology Letters, December 2014, vol. 17, no 12, pp. 1570-1579. [ DOI : 10.1111/ele.12379 ]

    https://hal.inria.fr/hal-01084299
  • 81V. Calcagno, L. Mailleret, E. Wajnberg, F. Grognard.

    How optimal foragers should respond to habitat changes: a reanalysis of the Marginal Value Theorem, in: Journal of Mathematical Biology, November 2014, vol. 69, no 5, pp. 1237-1265. [ DOI : 10.1007/s00285-013-0734-y ]

    https://hal.inria.fr/hal-00871355
  • 82A. Carta, M. Chaves, J.-L. Gouzé.

    A class of Switched Piecewise Quadratic Systems for coupling gene expression with growth rate in bacteria, in: 9th IFAC Symposium Nonlinear Control Systems (NOLCOS'13), Toulouse, France, S. Tarbouriech, M. Krstic (editors), IFAC, 2013, vol. 9 Part 1, pp. 271-276. [ DOI : 10.3182/20130904-3-FR-2041.00140 ]

    http://hal.inria.fr/hal-00850372
  • 83M. Chaves, A. Carta.

    Attractor computation using interconnected Boolean networks: testing growth rate models in E. Coli, in: Theoretical Computer Science, 2014, 17 p. [ DOI : 10.1016/j.tcs.2014.06.021 ]

    https://hal.inria.fr/hal-01095196
  • 84D. Demory.

    Étude théorique et expérimentale de l'effet de l'hydrodynamique sur la photosynthèse du phytoplancton par un dispositif novateur à base de LED, Université Pierre and Marie Curie, Paris VI, 2013.

    http://hal.inria.fr/hal-00852252
  • 85N. Giordano, F. Mairet, J.-L. Gouzé, J. Geiselmann, H. De Jong.

    Dynamic optimisation of resource allocation in microorganisms, in: 21st International Symposium on Mathematical Theory of Networks and Systems (MTNS 2014), Groningen, Netherlands, July 2014.

    https://hal.inria.fr/hal-01079299
  • 86J.-L. Gouzé, A. Rapaport, Z. Hadj-Sadok.

    Interval observers for uncertain biological systems, in: Ecological modelling, 2000, vol. 133, pp. 45-56.

    http://dx.doi.org/10.1016/S0304-3800(00)00279-9
  • 87G. M. Grimaud, A. Dron, S. Rabouille, A. Sciandra, O. Bernard.

    Modelling light-dark regime influence on the carbon-nitrogen metabolism in a unicellular diazotrophic cyanobacterium, in: CAB, Mumbai, India, December 2013.

    http://hal.inria.fr/hal-00854479
  • 88G. M. Grimaud, F. Mairet, O. Bernard.

    Modelling thermal adaptation in microalgae : an adaptive dynamics point of view, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014, pp. 4376-4381. [ DOI : 10.3182/20140824-6-ZA-1003.00982 ]

    https://hal.inria.fr/hal-01094700
  • 89F. M. Hamelin, M. Castel, S. Poggi, D. Andrivon, L. Mailleret.

    Seasonality and the evolutionary divergence of plant parasites, in: Ecology, 2011, vol. 92, pp. 2159-2166.

    http://hal-agrocampus-ouest.archives-ouvertes.fr/hal-00729263
  • 90P. Hartmann, Q. Béchet, O. Bernard.

    The effect of Time Scales in Photosynthesis on microalgae Productivity, in: Bioprocess and Biosystems Engineering, 2014, vol. 37, no 1, pp. 17-25. [ DOI : 10.1007/s00449-013-1031-2 ]

    https://hal.inria.fr/hal-00852255
  • 91P. Hartmann, Q. Béchet, O. Bernard.

    Interaction between Time Scales in Microalgae Based Processes, in: 20th Mediterranean Conference on Control & Automation (MED), Barcelona, Espagne, IEEE, 2012, pp. 561–566. [ DOI : 10.1109/MED.2012.6265697 ]

    http://hal.inria.fr/hal-00848416
  • 92P. Hartmann, D. Demory, C. Combe, R. Hamouda, J. Sainte-Marie, M.-O. Bristeau, A.-C. Boulanger, B. Sialve, J.-P. Steyer, S. Rabouille, A. Sciandra, O. Bernard.

    Growth Rate Estimation of Algae in Raceway Ponds: A Novel Approach, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014. [ DOI : 10.3182/20140824-6-ZA-1003.02408 ]

    https://hal.inria.fr/hal-01097313
  • 93G. Kerlero de Rosbo, O. Bernard.

    Évaluation du gisement potentiel de ressources algales pour l’énergie et la chimie en France à horizon 2030, ADEME, November 2014, 164 p.

    https://hal.inria.fr/hal-01102032
  • 94L. Lardon, A. Hélias, B. Sialve, J.-P. Steyer, O. Bernard.

    Life-Cycle Assessment of Biodiesel Production from Microalgae, in: Environ. Sci. Technol., 2009, vol. 43, pp. 6475-6481.
  • 95L. Mailleret, M. Castel, J. Montarry, F. M. Hamelin.

    From elaborate to compact seasonal plant epidemic models and back: is competitive exclusion in the details?, in: Theoretical Ecology, 2012, vol. 5, no 3, pp. 311 - 324. [ DOI : 10.1007/s12080-011-0126-0 ]

    https://hal.archives-ouvertes.fr/hal-01004161
  • 96L. Mailleret, V. Lemesle.

    A note on semi-discrete modelling in the life sciences, in: Philosophical Transactions of the Royal Society A: Mathematical,Physical and Engineering Sciences, 2009, vol. 367, no 1908, pp. 4779-4799. [ DOI : 10.1098/rsta.2009.0153 ]

    http://rsta.royalsocietypublishing.org/content/367/1908/4779.abstract
  • 97F. Mairet, O. Bernard, E. Cameron, M. Ras, L. Lardon, J.-P. Steyer, B. Chachuat.

    Three-reaction model for the anaerobic digestion of microalgae, in: Biotech. Bioeng., 2012, vol. 109, no 2, pp. 415-425.

    http://hal.inria.fr/hal-00848426
  • 98F. Mairet, O. Bernard.

    Robustness of Closed-Loop Control to Biodiversity: a Didactic Example, in: 19th IFAC World Congress, Cape Town, South Africa, August 2014, pp. 5321-5326. [ DOI : 10.3182/20140824-6-ZA-1003.02193 ]

    https://hal.inria.fr/hal-01094693
  • 99F. Mairet, O. Bernard, M. Ras, L. Lardon, J.-P. Steyer.

    Modeling anaerobic digestion of microalgae using ADM1, in: Bioresource Technology, 2011, vol. 102, no 13, pp. 6823–6829.

    http://hal.inria.fr/hal-00848429
  • 100F. Mairet, M. Moisan, O. Bernard.

    Estimation of neutral lipid and carbohydrate quotas in microalgae using adaptive interval observers, in: Bioprocess and Biosystems Engineering, January 2014, vol. 37, no 1, pp. 51-61. [ DOI : 10.1007/s00449-013-0913-7 ]

    https://hal.inria.fr/hal-00854476
  • 101F. Mairet, M. Moisan, O. Bernard.

    Interval observer with near optimal adaptation dynamics. Application to the estimation of lipid quota in microalgae, in: International Journal of Robust and Nonlinear Control, April 2014, vol. 24, no 6, pp. 1142-1157. [ DOI : 10.1002/rnc.2934 ]

    https://hal.inria.fr/hal-00848434
  • 102F. Mairet, R. Muñoz-Tamayo, O. Bernard.

    Driving Species Competition in a Light-limited Chemostat, in: 9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Toulouse, France, 2013.

    http://hal.inria.fr/hal-00852258
  • 103P. Masci, O. Bernard, F. Grognard.

    Continuous Selection of the Fastest Growing Species in the Chemostat, in: Proceedings of the IFAC conference, Seoul, Korea, 2008.
  • 104F. Mazenc, O. Bernard.

    ISS Interval Observers for Nonlinear Systems Transformed Into Triangular Systems, in: International Journal of Robust and Nonlinear Control, May 2014, vol. 24, no 7, pp. 1241–1261. [ DOI : 10.1002/rnc.2937 ]

    https://hal.inria.fr/hal-01088143
  • 105J. Moreno.

    Optimal time control of bioreactors for the wastewater treatment, in: Optimal Control Applications and Methods, 1999, vol. 20, no 3, pp. 145–164.

    http://dx.doi.org/10.1002/(SICI)1099-1514(199905/06)20:3<145::AID-OCA651>3.0.CO;2-J
  • 106R. Muñoz-Tamayo, F. Mairet, O. Bernard.

    Driving microalgal production in raceway systems to near optimal productivities, in: European Control Conference (ECC13), Zurich, Switzerland, 2013.

    http://hal.inria.fr/hal-00852259
  • 107R. Muñoz-Tamayo, F. Mairet, O. Bernard.

    Optimizing microalgal production in raceway systems, in: Biotechnology Progress, 2013, vol. 29, no 2, pp. 543–552. [ DOI : 10.1002/btpr.1699 ]

    http://hal.inria.fr/hal-00850376
  • 108S. Nundloll.

    Dos and don'ts in augmentative biological control: insights from mathematical modelling, Université de Nice-Sophia Antipolis, 2010.
  • 109D. A. Oyarzún, M. Chaves, M. Hoff-Hoffmeyer-Zlotnik.

    Multistability and oscillations in genetic control of metabolism, in: Journal of Theoretical Biology, 2012, vol. 295, pp. 139-153. [ DOI : 10.1016/j.jtbi.2011.11.017 ]

    https://hal.inria.fr/hal-00848440
  • 110T. Perrot.

    Evolution de la virulence chez un nématode phytoparasite: modélisation et optimisation du déploiement des plantes résistantes, Université de Montpellier 2, June 2014.

    https://hal.inria.fr/hal-01096844
  • 111M. Ras, J.-P. Steyer, O. Bernard.

    Temperature effect on microalgae: a crucial factor for outdoor production, in: Reviews in Environmental Science and Bio/Technology, 2013, vol. 12, no 2, pp. 153-164. [ DOI : 10.1007/s11157-013-9310-6 ]

    http://hal.inria.fr/hal-00852286
  • 112B. Sialve, N. Bernet, O. Bernard.

    Anaerobic digestion of microalgae as a necessary step to make microalgal biodiesel sustainable, in: Biotechnol. Advances, 2009, vol. 27, pp. 409-416.
  • 113B. Sialve, J.-P. Steyer, E. Latrille, O. Bernard, G. Bougaran, R. Kaas, J.-P. Cadoret.

    Procédé de fixation de CO2 et de traitement des déchets organiques par couplage d'un système de digestion anaérobie et d'un système de production de microorganismes phytoplanctoniques, 2009, no 09/50334.
  • 114Task Group for Mathematical Modelling of Anaerobic Digestion Processes I. W. A.

    Anaerobic Digestion Model No. 1 (ADM1), IWA Publishing, London, 2002.
  • 115L. Tournier, M. Chaves.

    Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics, in: Automatica, 2013, vol. 49, no 4, pp. 884-893. [ DOI : 10.1016/j.automatica.2013.01.015, ]

    https://hal.inria.fr/hal-00848450


previous Previous | up Home