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Section: Dissemination

Teaching - Supervision - Juries

Teaching

Teaching in computer science:

  • License: L. Noé, Networks, 42h, L3 Computer science, Univ. Lille 1.

  • License: L. Noé, Programming (Python), 54h, L3 Computer science' S3H, Univ. Lille 1.

  • License: L. Noé, Coding and information theory, 36h, L2 Computer science, Univ. Lille 1.

  • License: L. Noé, Functional Programming, 30h, L2 Computer science, Univ. Lille 1.

  • License: J.-S. Varré, Object oriented programming, 36h, L2 Computer Science, Univ. Lille 1.

  • License: J.-S. Varré, Algorithms and data structures, 50h, L2 Computer science, Univ. Lille 1.

  • License: J.-S. Varré, System, 84h, L3 Computer science, Univ. Lille 1.

  • Master: J.-S. Varré, M. Salson, Software project, 40h, M1 Computer science, Univ. Lille 1.

  • License: P. Marijon Databases, 36h, L3 Computer science, Univ. Lille 1.

  • License: S. Janot, Introduction to programming (C), 50h, L3 Polytech'Lille, Univ. Lille 1.

  • License: S. Janot, Databases, 30h, L3 Polytech'Lille, Univ. Lille 1.

  • Master: S. Janot, Databases, 12h, M1 Polytech'Lille, Univ. Lille 1.

  • Master: S. Janot, Logic and Semantic Web, 80h, M1 Polytech'Lille, Univ. Lille 1.

  • Licence: M. Pupin, Programming (Python), 78h, L1 Sciences, Univ. Lille 1.

  • Licence: M. Pupin, occupational integration, 30h, L3 computer science, Univ. Lille 1.

  • Master: : M. Pupin, Programming (JAVA), 24h, M1 “Mathématiques et finance”, Univ. Lille 1.

  • License: C. Saad, Algorithmics and programming, 28h, L3 Polytech'Lille, Univ. Lille 1.

  • License: C. Saad, Databases, 36h, L3 Polytech'Lille, Univ. Lille 1.

  • License: C. Saad, Data structures, 18h, L3 Polytech'Lille, Univ. Lille 1.

  • License: C. Saad, Introduction to programming (C), 34h, L3 Polytech'Lille, Univ. Lille 1.

  • License: C. Saad, Programming (C), 22h, L3 Polytech'Lille, Univ. Lille 1.

  • License: M. Salson, Programming (Python), 42h, L1 Sciences, Univ. Lille 1.

  • License: M. Salson, Coding and information theory, 63h, L2 Computer science, Univ. Lille 1.

Teaching in bioinformatics:

  • License: S. Blanquart, R. Chikhi, M. Giraud, Bioinformatics, 40h, L3 Computer Science, Univ. Lille 1.

  • Master: S. Blanquart, Algorithms and applications in bioinformatics, 24h, M1 Computer Science, Univ. Lille 1.

  • Master: S. Blanquart, Methods in phylogenetics, 4h, M2 Biodiversité Evolution Ecologie, Univ. Lille 1.

  • Master: L. Noé, Bioinformatics, 40h, M1 Biotechnologies, Univ. Lille 1.

  • Master: M. Pupin, Bioinformatics, 34h, M1 ”Biologie-Santé“, Univ. Lille 1.

  • Master: M. Salson, Algorithms for life sciences, 20h, M2 Complex models, algorithms and data, Univ. Lille 1.

Teaching in skeptical thinking:

  • License: M. Giraud, 35h, L3 Computer science, Univ. Lille 1.

  • Master: M. Salson, Skeptical thinking, 27h, M2 Journalist and Scientist, ESJ, Univ. Lille 1.

Formation for academics:

  • Bilille permanent training: S. Blanquart (Phylogenetics, 28h), M. Pupin (Gene prediction and protein annotation, 14h), J.S. Varré (Gene prediction and protein annotation, 14h), C. Saad (Variants, 13h), R. Chikhi (De novo assembly and Metagenomics de novo assembly, 8h), H. Touzet (Metagenomics, 3h), L. Noé (DNAmapping, 3h), M. Salson (RNA-seq analysis, 1h).

  • Workshop on Genomics (Czech Republic): R. Chikhi De novo assembly, 8h, young researchers.

  • Roscoff summer school in Bioinformatics: R. Chikhi De novo assembly, 8h, engineers and researchers.

  • Software training (Granada, Spain and Rennes, France): R. Chikhi Using the GATB library, 2x8h, engineers and researchers.

Teaching administration

  • Head of the licence semester “Computer Science – S3 Harmonisation (S3H)”, Univ. Lille 1 (L. Noé).

  • Member of faculty council (M. Pupin, J.-S. Varré).

  • Head of the 3rd year of licence of computer science, Univ. Lille 1 (J.-S. Varré).

  • Head of the GIS department (Software Engineering and Statistics) of Polytech'Lille (S. Janot).

  • Head of the computer science modules in the 1st year of Licence, Univ. Lille 1 (M. Pupin).

Supervision

  • PhD: L. Siegwald, Solutions d'amélioration des études de métagénomique ciblée, 2017/03/23, H.  Touzet, Y. Lemoine.

  • PhD: P. Pericard, Algorithmes pour la reconstruction de séquences de marqueurs conservés dans des données de métagénomique, 2017/10/27, H. Touzet, S. Blanquart.

  • PhD in progress: T. Rocher, Indexing VDJ recombinations in lymphocytes for leukemia follow-up, 2014/11/01, M. Giraud, M. Salson.

  • PhD in progress: C. Saad, Caractérisation des erreurs de séquençage non aléatoires, application aux mosaïques et tumeurs hétérogènes, 2014/10/01, M.-P. Buisine, H. Touzet, J. Leclerc, L. Noé, M. Figeac.

  • PhD in progress: Q. Bonenfant, Algorithmes pour l'analyse de séquençage ARN troisième génération, 2017/11/15, L. Noé, H. Touzet.

  • PhD in progress: P. Marijon, Analyse de graphes d'assemblage issus du séquençage ADN troisième génération, 2016, R. Chikhi, J-S. Varré.

Juries

  • H. Touzet was member of the PhD juries of Antoine Limasset (Université Rennes 1), Anna Kuosmanen (University of Helsinki), Jean-Pierre Glouzon (University of Sherbrooke), Guillaume Madeleine (Université Lille 1) and Jananan Pathmanathan (UPMC).

  • R. Chikhi was member of the PhD juries of Kamil Salikhov (Université de Paris-Est) and Guillaume Holley (Bielefeld University).

  • M. Salson was member of the PhD jury of Alice Héliou (Université Paris-Sud).

  • H. Touzet was member of hiring committees (professors) at Université de Nantes and Université de Strasbourg.



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