Bibliography

Publications of the year

Articles in International Peer-Reviewed Journals

• 1R. Chait, J. Ruess, T. Bergmiller, G. Tkačik, C. C. Guet.
  
  Shaping bacterial population behavior through computer-interfaced control of individual cells, in: Nature Communications, November 2017, vol. 8, n^o 1, 1535 p. [ DOI : 10.1038/s41467-017-01683-1 ]
  
  https://hal.inria.fr/hal-01669883
• 2J.-B. Lugagne, S. Sosa Carrillo, M. Kirch, A. Köhler, G. Batt, P. Hersen.
  
  Balancing a genetic toggle switch by real-time feedback control and periodic forcing, in: Nature Communications, December 2017, vol. 8, n^o 1, pp. 1-8. [ DOI : 10.1038/s41467-017-01498-0 ]
  
  https://hal.inria.fr/hal-01666980
• 3S. K. Palaniappan, F. Bertaux, M. Pichené, E. Fabre, G. Batt, B. Genest.
  
  Abstracting the dynamics of biological pathways using information theory: a case study of apoptosis pathway, in: Bioinformatics, February 2017, vol. 33, n^o 13, pp. 1980 - 1986. [ DOI : 10.1093/bioinformatics/btx095 ]
  
  https://hal.inria.fr/hal-01547618
• 4J. Ruess, H. Koeppl, C. Zechner.
  
  Sensitivity estimation for stochastic models of biochemical reaction networks in the presence of extrinsic variability, in: Journal of Chemical Physics, 2017, vol. 146, n^o 12, 124122 p. [ DOI : 10.1063/1.4978940 ]
  
  https://hal.archives-ouvertes.fr/hal-01547484
• 5C. Versari, S. Stoma, K. Batmanov, A. Llamosi, F. Mroz, A. Kaczmarek, M. Deyell, C. Lhoussaine, P. Hersen, G. Batt.
  
  Long-term tracking of budding yeast cells in brightfield microscopy: CellStar and the Evaluation Platform, in: Interface, 2017, vol. 14, n^o 127, 32 p. [ DOI : 10.1098/rsif.2016.0705 ]
  
  https://hal.inria.fr/hal-01547623

Invited Conferences

• 6F. Fages.
  
  Model-based Investigation of the Circadian Clock and Cell Cycle Coupling in Mouse Embryonic Fibroblasts: Prediction of RevErb-α Up-regulation During Mitosis, in: Dynamics Days 2017 - XXXVII Dynamics Days Europe International Conference, Szeged, Hungary, June 2017.
  
  https://hal.inria.fr/hal-01651833

International Conferences with Proceedings

• 7A. Carcano, F. Fages, S. Soliman.
  
  Probably Approximately Correct Learning of Regulatory Networks from Time-Series Data, in: CMSB'17 - 15th International Conference on Computational Methods for Systems Biology, Darmstadt, Germany, J. Feret, H. Koeppl (editors), September 2017, vol. Lecture Notes in Computer Science, n^o 10545, pp. 74-90.
  
  https://hal.inria.fr/hal-01519826

Scientific Books (or Scientific Book chapters)

• 9F. Bertaux, D. Drasdo, G. Batt.
  
  System modeling of receptor-induced apoptosis, in: TRAIL, Fas Ligand, TNF and TLR3 in Cancer, O. Micheau (editor), Resistance to Targeted Anti-Cancer Therapeutics, 2017, n^o 12, https://arxiv.org/abs/1712.06822.
  
  https://hal.inria.fr/hal-01667015

Scientific Popularization

• 10F. Fages, G. Le Guludec.
  
  Programmes biochimiques et algorithmes mixtes analogiques-digitaux dans la cellule, in: Sciences de la vie, sciences de l’information, T. Gaudin, D. Lacroix, M.-C. Maurel, J.-C. Pomerol (editors), Colloque de Cérisy, ISTE editions, September 2017.
  
  https://hal.inria.fr/hal-01409743

Other Publications

• 11F. Fages, T. Martinez, D. A. Rosenblueth, S. Soliman.
  
  Influence Networks compared with Reaction Networks: Semantics, Expressivity and Attractors, October 2017, Submitted to IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS.
  
  https://hal.inria.fr/hal-01510216
• 12C.-N. Lai, J.-H. Jiang, F. Fages.
  
  Recombinase-Based Genetic Circuit Optimization, October 2017, pp. 1-4, BioCAS 2017 - 13th IEEE Biomedical Circuits and Systems Conference, Poster.
  
  https://hal.inria.fr/hal-01659183