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New Software and Platforms
Bibliography
New Software and Platforms
Bibliography


Section: Dissemination

Promoting Scientific Activities

Scientific Events Organisation

Member of the Organizing Committees

François Fages is co-organizer of the CSBC Workshop on Computational Systems Biology for Cancer, Institut des Systèmes Complexes, Paris, France, 24-26 jan. 2018.

Scientific Events Selection

Member of the Conference Program Committees
  • François Fages was member of the PC of

    • CMSB'17 The 15th conference on Computational Methods for Systems Biology, September 27th to 29th 2017, Darmstadt, Germany.

    • FroCos'17 The 11th International Symposium on Frontiers of Combining Systems, 25-29 September 2017, Brasilia, Brazil.

Reviewer
  • François Fages reviewed one article for the 15th Int. Computer Science Symposium in Russia CSR 2017.

Journal

Member of the Editorial Boards

François Fages is member of

  • the Editorial Board of the Computer Science area of the Royal Society Open Science journal since 2014,

  • the Editorial Board of the journal RAIRO OR Operations Research since 2004.

Reviewer - Reviewing Activities

In addition to their Editorial Board and Program Committee duties,

  • Grégory Batt reviewed one article for Nature Scientific Reports.

  • François Fages reviewed articles for Bioinformatics, ACM Transactions on Modeling and Computer Simulation, Fundamenta Informaticae, Computers and Industrial Engineering

  • Sylvain Soliman reviewed articles for Briefings in Bioinformatics, PNAS, Transactions on Computational Biology and Bioinformatics

Invited Talks

  • Virgile Andréani gave a poster presentation at the Spring school on Computational Systems Biology (CompSysBio 2017), Aussois, March 19-25 2017

  • Gregory Batt gave invited talks at

    • Computational biology seminar of Curie Institute, “Predicting long-term effects of repeated apoptosis-inducing drug treatments: coupling signal transduction pathways with stochastic protein turnover models”, Paris, Jan 19 2017.

    • 6th Annual Consortium Meeting of Revive LabEx, “Multi-scale modeling of TRAIL-induced apoptosis: from protein level fluctuations to drug resistance in multicellular spheroids”, Montvillargenne, Jan 24 2017.

    • ENS/ESPCI joint Biophysics seminar, “Balancing a genetic toggle switch by real-time control or periodic stimulations”, Paris, Feb 10 2017.

    • BioNetVisA 2017 workshop “From biological network reconstruction to data visualization and analysis in molecular biology and medicine”, “A multi-scale model for investigating TRAIL resistance in multi-cellular tumor spheroids”, Basel, Sept 12 2017.

    • Workshop on Control of Cellular and Molecular Systems, “Balancing a genetic toggle switch by real-time control or periodic stimulations”, Mathematical Biosciences Institute, Ohio State University.

    • Second Symposium du Réseau de Biologie des Systèmes de Sorbonne Université, “Balancing a genetic toggle switch by real-time control or periodic stimulations”, Paris, Dec 1 2017.

  • François Fages gave invited talks at

    • National Taiwan University, Dept. Electrical Engineering, “Strong Turing Completeness of Continuous Chemical Reaction Networks and Compilation of Mixed Analog-Digital Programs”, Tapei, Taiwan, 9 Nov 2017.

    • Centre de Recherche Interdisciplinaire, CRI Paris, “Living with Algorithms and Algorithms of the Living”, Paris, 29 June 2017.

    • GT BIOSS-preGDR IA, keynote talk “In Quest of the Software of the Living: Successes and Difficulties of the Program Verification Paradigm in Cell Biology”, Gif sur Yvette, 22 June 2017.

    • Dynamic Days Europe, “Quantitative Modelling of the Circadian Clock and Cell Cycle Coupling: Prediction of RevErb- alpha Up-Regulation during Mitosis in Mouse Embryonic Fibroblasts – Temporal Logic Constraints and Parameter Search in BIOCHAM”, Szeged, Hungary, 7 June 2017.

    • “Turing Completeness of Biochemical Reactions over a finite set of molecules under the Differential Semantics and Compilation of Mixed Analog-Digital Programs”, French Ambassy in Berlin, Germnany, 1 June 2017.

    • GT BIOSS “Turing Completeness of Biochemical Reactions under the Continuous Semantics and Compilation of Mixed Digital-Analog Programs”, Montpellier, 13 March 2017.

    • Lab Sys2diag “Biochemical Compiler and Mixed Analog-Digital Algorithms in the Cell”, Montpellier, 9 March 2017.

  • Jean-Baptiste Lugagne gave invited talks at

    • Khammash lab seminar, “Balancing a genetic toggle switch by real-time feedback control and periodic forcing”, ETHZ, Zurich, March 2017

    • Seminar of SynthSys Centre for Synthetic and Systems Biology, “Balancing a genetic toggle switch by real-time feedback control and periodic forcing”, University of Edinburgh, June 08 2017

    • International Workshop on Control Engineering and Synthetic Biology, `Balancing a genetic toggle switch by real-time feedback control and periodic forcing” (poster presentation), Royal Academy of Engineering, London, July 17 2017

    • Seminar of Theory of Living Matter Group, “Balancing a genetic toggle switch by real-time feedback control and periodic forcing”, University of Cambridge, July 19 2017

  • Jakob Ruess gave invited talks at

    • Working days of GT BIOSS “Control of bio-digital systems in single cells”, March 13 2017

    • Conference of GdR Biologie Synthétique et Systémique (BioSynSys) “Control of bio-digital systems in single cells”, La Grande Motte, Oct 10 2017

Leadership within the Scientific Community

Scientific Expertise

  • Gregory Batt

    • has been in charge of the definition of the 16th challenge of the 2018-2022 Inria strategic plan on predictive systems biology

    • has been a member of the INRA selection committee for hiring permanent junior researchers (CR2)

    • has evaluated the PhD thesis of Lorena Postiglioni and Giansimone Perrino (Diego di Bernardo, Tigem, Italy; Thesis evaluation report)

    • has been a member of thesis advisory committee meetings for Arnaud Bonnaffoux (Olivier Gandrillon ENS Lyon/Cosmo Company), Raphael Goujet (Ariel Lindner, CRI, Paris), Adele Kerjouan (Olivier Destaing, IAB, Grenoble), and Mathilde Koch (Jean-Loup Faulon, INRA, Jouy en Josas)

  • François Fages

    • is a member of the jury for the Prix de thèse Gilles Kahn of the Société Informatique de France, since 2015,

    • reviewed one Research Fellowship application for the Royal Commission for the Exhibition of 1851

Research Administration

  • François Fages is member of the “Bureau du Comité des Projets” of Inria Saclay-IdF.

  • Sylvain Soliman is member of the “Commission Scientifique” of Inria Saclay-IdF