Section: Dissemination

Teaching - Supervision - Juries

Teaching

• Licence : R. Andonov, Graph Algorithms, 60h, L3, Univ. Rennes 1, France.

• Licence : W. Delage, J. Gautier, Biostatistic, 60 h, L2, Univ. Rennes 1, France.

• Licence : W. Delage, Bioinformatics, 8 h , L2, Univ. Rennes 1, France.

• Licence : K. Da Silva, Algorithms and Complexity, 36 h, L3, ENSAI, Rennes, France.

• Master : R. Andonov, S. Francois, Operational research, 82h, M1 Miage, Univ. Rennes 1, France.

• Master : L. Lecompte, Python for ecologists, 24h, M1, Univ. Rennes 1, France.

• Master : L. Lecompte, P. Peterlongo, Algorithms on Sequences, 52h, M2, Univ. Rennes 1, France.

• Master : C. Guyomar, statistical learning, 32h, M1, Univ. Rennes, France.

• Master : P. Peterlongo, Experimental Bioinformactics, 24h, M1, ENS Rennes, France.

• Master : F. Legeai, RNA-Seq, Metagenomics and Variant discovery, 12h, M2, AgroCampusOuest, National Superior School Of Agronomy, Rennes, France.

• Master : R. Andonov, Advanced Algorithmics, 25h, Univ. Rennes 1, France.

• Master : D. Lavenier, Memory Efficient Algorithms for Big Data, Engineering School, ESIR, Rennes

• Training : C. Lemaitre, P. Peterlongo, GATB Programming Day, 8h (April 18), Paris, France.

Supervision

• PhD : C. Guyomar, Bioinformatic tools and applications for metagenomics of bacterial communities associated to insects, Univ Rennes, 07/12/2018, J.C. Simon, C. Mougel, C. Lemaitre. [8]

• PhD : C. Marchet, Nouvelles méthodologies pour l’assemblage de données de séquençage polymorphes, Univ Rennes, 20/09/2018, P. Peterlongo. [9]

• PhD in progress : S. François, Combinatorial Optimization Approaches for Bioinformatics, 01/10/2016, R. Andonov.

• PhD in progress : L. Lecompte, Structural Variant detection in long-read sequencing data, 01/09/2017, D. Lavenier and C. Lemaitre.

• PhD in progress : W. Delage, De novo local assembly approaches for the detection of complex genomic variations in rare diseases, 01/10/2017, J. Thévenon and C. Lemaitre.

• PhD in progress: K. da Silva, METACATALOGUE: un nouveau cadre pour l'exploration de données de séquençage du microbiote intestinal, 01/10/2018, M. Berland, N. Pons and P. Peterlongo.

• PhD in progress: R. Kar, Assembly and annotation of heterozygous insect genomes, 15/08/2018, F. Legeai, D. Tagu and P. Peterlongo.

• PhD in progress: G. Siekaniec, Caractérisation différentielle de souches d'espèces bactériennes, 01/10/2018, E. Roux and J. Nicolas.

Juries

• Member of Habilitation thesis jury. Thomas Bruls, Univ. Paris-Saclay [D. Lavenier]

• Member of Ph-D thesis juries. Yoann Seelheuthner, University Paris-Saclay [C. Lemaitre].

• Referee of Ph-D thesis. Antoine Recanati, ENS Paris [D. Lavenier], Nicolas Dierckxsens, Univ. Libre de Bruxelle [D. Lavenier], Chadi Saad, Univ. Lille [J. Nicolas], Florian Plaza Oñate, INRA MetaGenoPolis [P. Peterlongo]

• Member of Ph-D thesis committee. Chi Nguyen Lam, Univ. Brest [D. Lavenier], Benjamin Churcheward, Univ. Nantes [D. Lavenier], Guillaume Gautreau, CEA, Genoscope [P. Peterlongo], Victor Gaborit, Univ. Nantes [P. Peterlongo], Afaf Saaid, Univ. Paris Saclay, Ecole Polytechnique [P. Peterlongo], Magali Dancette, Univ. Claude Bernard Lyon 1 [P. Peterlongo]