Section: Dissemination

Teaching - Supervision - Juries

Teaching

Four members of the IBIS team are either full professor or associate professor at Univ Grenoble Alpes. They therefore have a full teaching service (at least 192 hours per year) and administrative duties related to the organization and evaluation of the university course programs on all levels (from BSc to PhD). Besides the full-time academic staff in IBIS, the following people have contributed to courses last year.

Eugenio Cinquemani

• Course: Stochastic modelling of gene regulatory networks, M2, BIM, INSA de Lyon (4 h)

• Course: Statistics for systems biology, M1, Master Approches Interdisciplinaires du Vivant, CRI/Univ Paris Descartes (20 h, also in charge of 20 h of practicals)

• Course: Modelling and identification of metabolic networks, M1, Phelma, INP Grenoble (4 h)

Hidde de Jong

• Course and practicals: Modeling and simulation of gene regulatory networks, M2, BIM, INSA de Lyon (20 h)

Aline Marguet

• Practicals: Biostatistics, M2, Univ Grenoble Alpes (24 h)

Delphine Ropers

• Course and practicals: Modelling in systems biology, M1, Phelma, INP Grenoble (16 h)

• Course and practicals: Cell systems biology and modelling cell functions, M1, Master ingéniérie de la santé, Univ Grenoble Alpes (14 h)

Thibault Etienne

• Course: Construction et analyse de plasmides in silico, M1, Master ingéniérie de la santé, Univ Grenoble Alpes (4 h)

Antrea Pavlou

• Practicals: Cellular biology, L1, Chemistry and biochemistry, Univ Grenoble Alpes (28 h)

Supervision

• HdR: Eugenio Cinquemani, Identification, estimation and control of gene expression and metabolic network dynamics [14], Univ Grenoble Alpes, Nov 2019

• PhD in progress: Thibault Etienne, Analyse intégrative de la coordination entre stabilité des ARNm et physiologie cellulaire chez Escherichia coli. Supervisors: Delphine Ropers and Muriel Cocaign-Bousquet (INRA Toulouse)

• PhD in progress: Joël Espel, RNA engineering: Design of the dynamical folding of RNA and of RNA switches. Supervisors: Alexandre Dawid (Univ Grenoble Alpes) and Johannes Geiselmann

• PhD in progress: Antrea Pavlou, Experimental and computational analysis of bacterial self-replicators. Supervisors: Hidde de Jong and Johannes Geiselmann

• PhD in progress: Maaike Sangster, Development, characterization and control of E. coli communities on an automated experimental platform. Supervisors: Eugenio Cinquemani and Johannes Geiselmann

Juries

PhD thesis committees

Table 25.

IBIS member	Role	PhD student	University	Date
Johannes Geiselmann	Président	Vanni Petrolli	Univ Grenoble Alpes	Nov 2019
Hidde de Jong	Rapporteur	Pauline Trébulle	AgroParisTech	Oct 2019
Hidde de Jong	Rapporteur	Firas Hammami	Univ d’Aix-Marseille	Dec 2019
Delphine Ropers	Examinateur	Marianyela Petrizzelli	Univ Paris Sud	Jul 2019
Delphine Ropers	Examinateur	Ronan Duchesne	Univ de Lyon	Dec 2019

Habilitation (HDR) committees

Table 26.

IBIS member	Role	HDR candidate	University	Date
Johannes Geiselmann	Président	Marianne Weidenhaupt	Univ Grenoble Alpes	Jan 2019
Hidde de Jong	Président	Arnaud Tonnelier	Univ Grenoble Alpes	Jun 2019
Hidde de Jong	Rapporteur	Stefan Müller	University of Vienna	Sep 2019
Hidde de Jong	Examinateur	Eugenio Cinquemani	Univ Grenoble Alpes	Nov 2019

PhD advisory committees

Table 27.

IBIS member	PhD student	University
Eugenio Cinquemani	Arthur Carcano	Institut Pasteur/Inria
Eugenio Cinquemani	Alexey Koshkin	ENS de Lyon
Johannes Geiselmann	Alain Lombard	Univ Grenoble Alpes
Johannes Geiselmann	Shiny Martis	INSA de Lyon
Hidde de Jong	Charlotte Coton	INRA Moulon
Hidde de Jong	Kapil Newar	Univ Grenoble Alpes
Hidde de Jong	Agustín Yabo	Univ Nice–Sophia-Antipolis
Stéphan Lacour	Julien Trouillon	CEA Grenoble
Stéphan Lacour	Camille Brunet	CHU Grenoble
Stéphan Lacour	Raphael Fourquet	INSA de Lyon/Univ de Lyon
Stéphan Lacour	Kevin Pick	Univ de Lyon
Delphine Ropers	Manon Barthe	Univ Paul Sabatier, Toulouse
Delphine Ropers	Charlotte Roux	Univ Paul Sabatier, Toulouse
Delphine Ropers	Irene Ziska	Univ de Lyon

Teaching administration

Yves Markowicz is director of the BSc department at Univ Grenoble Alpes.

Michel Page is coordinator of the master Systèmes d'information et d'organisation at the Institut d'Adminstration des Entreprises (IAE), Univ Grenoble Alpes.

Eugenio Cinquemani organizes a module on statistics in systems biology at CRI/Univ Paris Descartes.

Delphine Ropers organizes a module on the mathematical modeling of biological systems at PHELMA, INP Grenoble.

Hidde de Jong organizes with Daniel Kahn a module on the modeling of genetic and metabolic networks at INSA de Lyon.