Major publications by the team in recent years
  • 1J. Boulanger, A. Gidon, C. Kervrann, J. Salamero.

    A Patch-Based Method for Repetitive and Transient Event Detection in Fluorescence Imaging, in: PLoS ONE, Oct 2010, vol. 5, no 10, e13190 p. [ DOI : 10.1371/journal.pone.0013190 ]

  • 2J. Boulanger, C. Kervrann, P. Bouthemy.

    Space-time adaptation for patch based image sequence restoration, in: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2007, vol. 29, no 6, p. 1096–1102.
  • 3J. Boulanger, C. Kervrann, P. Bouthemy.

    A simulation and estimation framework for intracellular dynamics and trafficking in video-microscopy and fluorescence imagery, in: Medical Image Analysis, 2009, vol. 13, p. 132–142.
  • 4J. Boulanger, C. Kervrann, P. Bouthemy, P. Elbau, J.-B. Sibarita, J. Salamero.

    Patch-Based Nonlocal Functional for Denoising Fluorescence Microscopy Image Sequences, in: IEEE Transactions on Medical Imaging, Feb 2010, vol. 29, no 2, p. 442-453. [ DOI : 10.1109/TMI.2009.2033991 ]

  • 5P. M. Carlton, J. Boulanger, C. Kervrann, J.-B. Sibarita, J. Salamero, S. Gordon-Messer, J. Haber, S. Haase, L. Shao, A. Winoto, P. Kner, S. Usawa, Y. Strukov, M. Gustafsson, Z. Kam, D. Agard, J. W. Sedat.

    Fast live simultaneous multiwavelength four-dimensional optical microscopy, in: Proc Natl Acad Sci USA, Sep 2010, vol. 107, no 37, p. 16016-16022. [ DOI : 10.1073/pnas.1004037107 ]

  • 6C. Kervrann, J. Boulanger.

    Optimal spatial adaptation for patch-based image denoising, in: IEEE Transactions on Image Processing, 2006, vol. 15, no 10, p. 2866–2878.
  • 7C. Kervrann, J. Boulanger.

    Local adaptivity to variable smoothness for exemplar-based image denoising and representation, in: International Journal of Computer Vision, August 2008, vol. 79, no 1, p. 45–69.
Publications of the year

Articles in International Peer-Reviewed Journals

  • 8A. Gidon, S. Bardin, J. Boulanger, F. Waharte, B. Cinquin, L. Heliot, H. de la salle, D. Hanau, C. Kervrann, B. Goud, J. Salamero.

    Rab11A/MyosinVb/Rab11-FIP2 complex frames two late recycling steps of langerin from ERC to plasma membrane, in: Traffic, 2012, vol. 13, no 6, p. 815–833.
  • 9A. Guesdon, S. Blestel, C. Kervrann, D. Chrétien.

    Single versus dual-axis cryo-electron tomography of microtubules assembled in vitro: Limits and perspectives, in: Journal of Structural Biology, December 2012.

  • 10M. Pinot, V. Steiner, B. Dehapiot, B.-K. Yoo, F. Chesnel, L. Blanchoin, C. Kervrann, Z. Gueroui.

    Confinement induces actin flow in a meiotic cytoplasm., in: Proceedings National Academy of Sciences USA, July 2012, vol. 109, no 29, p. 11705–11710. [ DOI : 10.1073/pnas.1121583109 ]


International Conferences with Proceedings

  • 11D. Fortun, C. Kervrann.

    Semi-local variational optical flow estimation, in: IEEE International Conference on Image Processing, ICIP 2012, Orlando, FL, États-Unis, October 2012.

  • 12P. Roudot, C. Kervrann, F. Waharte, J. Boulanger.

    Lifetime MAP reconstruction in frequency-domain fluorescence lifetime imaging microscopy, in: IEEE International Conference on Image Processing, ICIP 2012, Orlando, FL, États-Unis, October 2012.

  • 13P. Roudot, C. Kervrann, F. Waharte.

    Lifetime estimation of moving vesicles in frequency-domain fluorescence lifetime imaging microscopy, in: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012, Barcelona, Espagne, May 2012, p. 668-671. [ DOI : 10.1109/ISBI.2012.6235636 ]

  • 14H.-F. Yang, X. Descombes, C. Kervrann, C. Medioni, F. Besse.

    Tracking Growing Axons by Particle Filtering in 3D+t Fluorescent Two-Photon Microscopy Images, in: Asian Conference on Computer Vision, Daejeon, Korea, Republic Of, November 2012.


Conferences without Proceedings

  • 15L. Guyon, C. Mignon, F. Senger, L. Blanchoin, J. Xie, C. Kervrann, D. Bourgeois.

    Lateral drift correction without fiduciary markers in PALM experiments, in: Swiss Single Molecule Localization Microscopy, Lausanne, Suisse, August 2012.

  • 16C. Kervrann, D. Fortun, P. Bouthemy.

    Aggregation methods for optical flow computation, in: SIAM Conference on Imaging Science, Philadelphia, États-Unis, May 2012.

  • 17C. Kervrann.

    Patch-based methods and algorithms for breaking the signal-to-noise ratio in fluorescence microscopy and cryo-electron microscopy, in: BioImage Informatics, Dresde, Allemagne, September 2012.

  • 18P. Roudot, C. Kervrann, F. Waharte.

    Semi-parametric robust Gaussian fitting, in: IEEE ISBI 2012 Workshop: Particle Tracking Challenge, Barcelona, Espagne, May 2012.

References in notes
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    Total Internal Reflection Fluorescent Microscopy in cell biology, in: Traffic, 2004, vol. 2, p. 4658–4668.
  • 20E. Betzig, G. Patterson, R. Sougrat, O. Lindwasser, S. Olenych, J. Bonifacino, M. Davidson, J. Lippincott-Schwartz, H. Hess.

    Imaging intracelluar fluorescent proteins at nanometer resolution, in: Science, 2006, vol. 313, p. 1642–1645.
  • 21G. Boncompain, S. Divoux, N. Gareil, H. de Forges, A. Lescure, L. Latreche, V. Mercanti, F. Jollivet, G. Raposo, F. Perez.

    Synchronization of secretory protein traffic in populations of cells, in: Nature Methods, 2012, vol. 9, no 5, p. 493–498.
  • 22T. Brox, J. Malik.

    Large displacement optical flow: descriptor matching in variational motion estimation, in: IEEE Trans. Pattern Analysis and Machine Intelligence, 2011, vol. 33, no 3, p. 500–513.
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    A review of image denoising algorithms, with a new one, in: SIAM J. Multiscale Modeling and Simulation, 2005, vol. 4, no 2, p. 490–530.
  • 24A. Chessel, B. Cinquin, S. Bardin, J. Boulanger, J. Salamero, C. Kervrann.

    A detection-based framework for the analysis of recycling in TIRF microscopy, in: IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2010), Pays-Bas Rotterdam, IEEE Signal Processing Society, Apr 2010, p. 1281-1284. [ DOI : 10.1109/ISBI.2010.5490230 ]

  • 25A. Chessel, B. Cinquin, S. Bardin, J. Salamero, C. Kervrann.

    Computational geometry-based scale-space and modal image decomposition: application to light video-microscopy imaging, in: Conf. on Scale Space and Variational Methods (SSVM'09), Voss, Norway, June 2009, p. 770–781.
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    Maximal meaningful events and applications to image analysis, in: Annals of Statistics, 2003, vol. 31, no 6, p. 1822-1851.
  • 29A. Genovesio, T. Liedl, V. Emiliani, W. Parak, M. Coppey-Moisan, J. Olivo-Marin.

    Multiple particle tracking in 3D+t microscopy: method and application to the tracking of endocytosed quantum dots, in: IEEE Trans. Image Processing, 2006, vol. 15, no 5, p. 1062–1070.
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    3D resolution doubling in wide-filed fluorescence microscopy by structured illumination, in: Biophysical J., 2008, vol. 94, p. 4957–4970.
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    Computing optical flow with physical models of brightness variation, in: IEEE Trans. Pattern Analysis and Machine Intelligence, 2001, vol. 23, no 6, p. 661–673.
  • 32T. Klar, S. Jakobs, M. Dyba, A. Egner, S. Hell.

    Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission, in: Proc. Natl. Acad. Sci. USA, 2000, vol. 97, p. 8206–8210.
  • 33C. Lavelle, H. Berry, G. Beslon, F. Ginelli, J. Giavitto, Z. Kapoula, A. Le Bivic, N. Peyrieras, O. Radulescu, A. Six, V. Thomas-Vaslin, P. Bourgine.

    From molecules to organisms: towards multiscale integrated model of biological systems, in: Theoretical Biology Insights, 2008, vol. 1, p. 13–22.
  • 34F. Nédélec, D. Foethke.

    Collective Langevin dynamics of flexible cytoskeletal fibers, in: New Journal of Physics, 2007, vol. 9, no 11 (427).
  • 35F. Nédélec.

    Computer simulations reveal motor properties generating stable antiparallel microtubule interactions, in: The Journal of Cell Biology, 2002, vol. 158, no 6, p. 1005–1015.
  • 36J.-M. Odobez, P. Bouthemy.

    Robust multiresolution estimation of parametric motion models, in: J. Visual Communication and Image Representation, 1995, vol. 6, no 4, p. 348–365.
  • 37P. Pérez, J. Vermaak, A. Blake.

    Data fusion for visual tracking with particles, in: Proc. IEEE, 2004, vol. 92, no 3, p. 495–513.
  • 38I. Sbalzarini, P. Koumoutsakos.

    Feature point tracking and trajectory analysis for video Imaging in cell biology, in: J. Structural Biology, 2005, vol. 151, p. 182–195.
  • 39I. Smal, M. Loog, W. Niessen, E. Meijering.

    Quantitative comparison of spot detection methods in fluorescence microscopy, in: IEEE Trans. Medical Imaging, 2010, vol. 29, no 2, p. 282–301.
  • 40I. Smal, E. Meijering, K. Draegestein, N. Galjart, I. Grigoriev, A. Akhmanova, M. van Royen, A. Houtsmuller, W. Niessen.

    Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering,, in: Medical Image Analysis, 2008, vol. 12, no 6, p. 764–777.
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    Image analysis for denoising full- field frequency-domain fluorescence lifetime images, in: J. Microscopy, 2009, vol. 235, no 2, p. 221–237.
  • 42D. Sun, S. Roth, M. Black.

    Secrets of optical flow estimation and their principles, in: IEEE Conference on Computer Vision and Pattern Recognition (CVPR'10), San Francis, CA, 2010, p. 2432–2439.
  • 43D. Thomann, D. Rines, P. Sorger, G. Danuser.

    Automatic fluorescent tag detection in 3D with super-resolution: application to the analysis of chromosome movement, in: J. Microscopy, 2002, vol. 298, no Part 1, p. 49–64.
  • 44Y. Vardi.

    Network tomography: estimating source-destination traffic intensities from link data, in: J. American Statistical Association, 1996, vol. 91, p. 365–377.
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    Visualization of image data from cells to organisms, in: Nature Methods, 2010, vol. 7, no 3 (Suppl), p. S26–41.
  • 46R. G. von Gioi, J. Jakubowicz, J.-M. Morel, G. Randall.

    On Straight Line Segment Detection, in: J. Mathematical Imaging and Vision, 2008, vol. 32, no 3, p. 313–347.