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Bibliography

Publications of the year

Articles in International Peer-Reviewed Journals

  • 1Y. Dufresne, L. Noé, V. Leclère, M. Pupin.

    Smiles2Monomers: a link between chemical and biological structures for polymers, in: Journal of Cheminformatics, December 2015. [ DOI : 10.1186/s13321-015-0111-5 ]

    https://hal.inria.fr/hal-01250619
  • 2A. Flissi, Y. Dufresne, J. Michalik, L. Tonon, S. Janot, L. Noé, P. Jacques, V. Leclère, M. Pupin.

    Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing, in: Nucleic Acids Research, 2015. [ DOI : 10.1093/nar/gkv1143 ]

    https://hal.archives-ouvertes.fr/hal-01235996
  • 3M. Kotrova, K. Muzikova, E. Mejstrikova, M. Novakova, V. Bakardjieva-Mihaylova, K. Fiser, J. Stuchly, M. Giraud, M. Salson, C. Pott, M. Brüggemann, M. Füllgrabe, J. Stary, J. Trka, E. Fronkova.

    The predictive strength of next-generation sequencing MRD detection for relapse compared with current methods in childhood ALL, in: Blood, August 2015, vol. 126, no 8, pp. 1045-7. [ DOI : 10.1182/blood-2015-07-655159 ]

    https://hal.archives-ouvertes.fr/hal-01241663
  • 4D. E. K. Martin, L. Noé.

    Faster exact distributions of pattern statistics through sequential elimination of states, in: Annals of the Institute of Statistical Mathematics, September 2015. [ DOI : 10.1007/s10463-015-0540-y ]

    https://hal.inria.fr/hal-01237045
  • 5A. Perrin, J.-S. Varré, S. Blanquart, A. Ouangraoua.

    ProCARs: Progressive Reconstruction of Ancestral Gene Orders, in: BMC Genomics, 2015, vol. 16, no Suppl 5, S6 p. [ DOI : 10.1186/1471-2164-16-S5-S6 ]

    https://hal.inria.fr/hal-01217311
  • 6M. Pupin, Q. Esmaeel, A. Flissi, Y. Dufresne, P. Jacques, V. Leclère.

    Norine: a powerful resource for novel nonribosomal peptide discovery, in: Synthetic and Systems Biotechnology, December 2015. [ DOI : 10.1016/j.synbio.2015.11.001 ]

    https://hal.inria.fr/hal-01250614
  • 7A. Saffarian, M. Giraud, H. Touzet.

    Modeling alternate RNA structures in genomic sequences, in: Journal of computational biology : a journal of computational molecular cell biology, February 2015, vol. 22, no 3, pp. 190-204.

    https://hal.archives-ouvertes.fr/hal-01228130

Invited Conferences

  • 8T. T. Tran, M. Giraud, J.-S. Varré.

    Perfect Hashing Structures for Parallel Similarity Searches, in: International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015), Hyderabad, India, 2015, pp. 332-341. [ DOI : 10.1109/IPDPSW.2015.105 ]

    https://hal.inria.fr/hal-01153893

International Conferences with Proceedings

Conferences without Proceedings

  • 10I. Guigon, S. LEGRAND, J.-F. Berthelot, M. Benmounah, H. Touzet.

    Finding and analysing microRNAs in plant genomes with miRkwood, in: JOBIM 2015, Clermont-Ferrand, France, July 2015.

    https://hal.archives-ouvertes.fr/hal-01247604

Scientific Books (or Scientific Book chapters)

  • 11E. Kopylova, L. Noé, C. Da Silva, J.-F. Berthelot, A. A. Alberti, J.-M. Aury, H. Touzet.

    Deciphering metatranscriptomic data, in: Methods in Molecular Biology, RNA Bioinformatics, Springer, January 2015, vol. 1269, pp. 279-291. [ DOI : 10.1007/978-1-4939-2291-8_17 ]

    https://hal.inria.fr/hal-01104015

Books or Proceedings Editing

  • 12M. Pop, H. Touzet (editors)

    Algorithms for bioinformatics, 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings, Springer Verlag, Atlanta, United States, September 2015, no 9289. [ DOI : 10.1007/978-3-662-48221-6 ]

    https://hal.archives-ouvertes.fr/hal-01228138