Section: Dissemination

Teaching - Supervision - Juries

Teaching

• License: J Rouzaud-Cornabas, Programmation orientée objets, 20heqTD, L3, INSA-Lyon, France

• Master: J Rouzaud-Cornabas, Systèmes, 10heqTD, M1, INSA-Lyon, France

• Master: J Rouzaud-Cornabas, Interface Homme Machine, 50heqTD, M1, INSA-Lyon, France

• Master: J Rouzaud-Cornabas, Évaluation de performance et reproducibilité, 6heqTD, M2, INSA-Lyon, France

• Master: J Rouzaud-Cornabas, Computational Science and High Performance Computing, 6heqTD, M2, INSA-Lyon, France

• Master: J Rouzaud-Cornabas, Parallel Computing, 80heqTD, M2, INSA-Lyon, France

• Master: J Rouzaud-Cornabas, Parallel Computing for Bio-informatics, 10heqTD, M2, INSA-Lyon, France

• Licence: C Rigotti, Object-Oriented Programming and Graphical User Interfaces, 86h, L2, Department 1er cycle of INSA-Lyon.

• Licence: C Rigotti, Simulation of Chemical Reactions, 26h, L2, Department 1er cycle of INSA-Lyon.

• Licence: C Rigotti, Numerical Modelling for Engineering, 60h, L2, Department 1er cycle of INSA-Lyon.

• Master: C Rigotti, Data Mining, 25h, M1, Bioinformatics and Modeling Department of INSA-Lyon.

• Master: E Tannier, Algorithmics for Bioinformatics, 18h, M1, Bioinformatics and Modeling Department of INSA-Lyon.

• Master: E Tannier, Algorithmics for Bioinformatics, 12h, M1, University of Lyon 1.

• Licence: C Knibbe, Algorithmique et programmation procédurale, 123h eqTD, L2 Informatique, Université Lyon 1, France

• Master: C Knibbe, Programmation web, 40h eqTD, M1 Informatique, Université Lyon 1, France

• Master: C Knibbe, Connaissance métier pour la recherche, 24h eqTD, M2 Informatique, Université Lyon 1, France

• Master: C Knibbe, Intelligence artificielle bio-inspirée, 22h eqTD, M2 Informatique, Université Lyon 1, France

• Licence: C Knibbe, Applications en mathématiques et informatique, 39h eqTD, L1 Informatique, Université Lyon 1, France

• Licence: C Knibbe, Programmation fonctionnelle pour le web, 20h eqTD, L2 Informatique, Université Lyon 1, France

• Master: C Knibbe, Programmation orientée objets pour la bioinformatique, 52h eqTD, M1 Bioinformatique, Université Lyon 1, France

• Master: C Knibbe, Projet en bioinformatique, 25h eqTD, M1 Bioinformatique, Université Lyon 1, France

Supervision

• PhD : Ilya Prokin, “Modeling and simulation of signal transduction in living cells: synaptic plasticity of basal ganglia neurons”, INSA Lyon, Ph.D. defended: December 02, 2016, Supervisor: H. Berry

• PhD in progress : Marie Fernandez, “Extraction and analysis of the acoustic network of social birds: tools for population tracking”, Starting date Oct 2016, co-supervision: H. Berry, H. Soula (CRC, Univ. P&M Curie, Paris) and C. Vignal (Univ. J. Monnet, Saint-Etienne)

• PhD in progress : Audrey Denizot, “Simulation of calcium signaling in fine astrocytic processes”, Starting date Oct 2016, co-supervision: H. Berry and H. Soula (CRC, Univ. P&M Curie, Paris)

• PhD in progress : Alexandre Foncelle, `Modeling the signaling pathway implicated in STDP: the role of endocannabinoid and dopamine signaling”, Starting date Oct 2014, supervision: H. Berry

• PhD in progress : Alvaro Mateos Gonzalez; “Anomalous subdiffusion equations as diffusion limits to integro PDEs with age structure”, Starting date Sep 2014, co-supervision: H. Berry, Vincent Calvez (EPI Numed) and Thomas Lepoutre (EPI Dracula).

• PhD in progress : Wandrille Duchemin; "Phylogénie des dépendences, dépendances des phylogénies", Starting date 2015, co-supervision: E Tannier and V Daubin (CNRS, Univ Lyon 1)

• PhD in progress : Yoann Anselmetti; "Evolution de l'organisation des génomes en présence de génomes non assemblés", Starting date 2015, co-supervision: E Tannier and S Bérard (Univ Montpellier)

• PhD in progress : Damir Hasic; "Gene tree Species tree reconciliation in the presence of gene conversion", Starting date 2016, co-supervision: E Tannier (Univ Sarajevo)

• PhD in progress: Sergio Peignier, Subspace clustering algorithms based on biological evolution mechanisms, INSA de Lyon, started in September 2014, C Rigotti and G Beslon.

• PhD in progress : Charles Rocabert, Studying Evolution of Evolution of Bacterial Microorganisms by Computer Simulation Approaches, started in October 2013, supervised by G Beslon and C Knibbe

• PhD in progress: Yoram Vadee Le Brun, "Evolution expérimentale in silico de réseaux de régulation génétique", INSA-Lyon (now Min. Enseignement National), Starting date Sep 2013, co-supervision: G Beslon, J Rouzaud-Cornabas

• PhD in progress: Vincent Liar, "Towards a quantitative digital genetics platform", INSA-Lyon, Starting date Oct 2016, co-supervision: G Beslon, J Rouzaud-Cornabas, C Ofria (Michigan State University, BEACON Center)

Juries

• C Knibbe is a reviewer of the PhD thesis Gaël Jalowicki, University College Dublin, October 2016

• H Berry is a Member (reviewer) of the PhD jury for Guillaume Rodriguez, “Modélisation des bases neuronales de la mémoire de travail paramétrique dans le cortex préfrontal” Univ. P & M Curie, Paris, Oct 20, 2016.

• H Berry is a Member (reviewer) of the HdR jury for Dominique Martinez, “Modélisation biologique, biocapteurs et inspiration pour la robotique autonome”, Univ. Nancy-Lorraine, Nancy, 2017

• H Berry is a Member of the Search committee for two tenured Full Professor positions in Systems Biology at University P & M Curie, Paris, 2016 (64PR0596 and 65PR3266)

• G Beslon is a member of the Jury of Ilya Prokins (INSA-Lyon, Lyon, France)

• G Beslon is a reviewer of the PhD thesis of Arthur Bertrand (UPMC, Paris, France)

• G Beslon is a reviewer of the PhD thesis of Sandro Colizzi (Utrecht University, Utrecht, NL)