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Bibliography

Major publications by the team in recent years
  • 1C. Belleannée, O. Sallou, J. Nicolas.

    Logol: Expressive Pattern Matching in sequences. Application to Ribosomal Frameshift Modeling, in: PRIB2014 - Pattern Recognition in Bioinformatics, 9th IAPR International Conference, Stockholm, Sweden, M. Comin, L. Kall, E. Marchiori, A. Ngom, J. Rajapakse (editors), Springer International Publishing, August 2014, vol. 8626, pp. 34-47. [ DOI : 10.1007/978-3-319-09192-1_4 ]

    https://hal.inria.fr/hal-01059506
  • 2J. Bourdon, D. Eveillard, A. Siegel.

    Integrating quantitative knowledge into a qualitative gene regulatory network, in: PLoS Computational Biology, September 2011, vol. 7, no 9. [ DOI : 10.1371/journal.pcbi.1002157 ]

    http://hal.archives-ouvertes.fr/hal-00626708
  • 3A. Bretaudeau, F. Coste, F. Humily, L. Garczarek, G. Le Corguille, C. Six, M. Ratin, O. Collin, W. M. Schluchter, F. Partensky.

    CyanoLyase: a database of phycobilin lyase sequences, motifs and functions, in: Nucleic Acids Research, November 2012, vol. 41. [ DOI : 10.1093/nar/gks1091 ]

    http://hal.inria.fr/hal-00760946
  • 4F. Coste, G. Kerbellec.

    A Similar Fragments Merging Approach to Learn Automata on Proteins, in: ECML:Machine Learning: ECML 2005, 16th European Conference on Machine Learning, Porto, Portugal, October 3-7, 2005, Proceedings, J. Gama, R. Camacho, P. Brazdil, A. Jorge, L. Torgo (editors), Lecture Notes in Computer Science, Springer, 2005, vol. 3720, pp. 522-529.
  • 5M. Gebser, C. Guziolowski, M. Ivanchev, T. Schaub, A. Siegel, P. Veber, S. Thiele.

    Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming, in: Principles of Knowledge Representation and Reasoning, AAAI Press, 2010.
  • 6C. Guziolowski, A. Bourdé, F. Moreews, A. Siegel.

    BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks, in: Bmc Genomics, 2009, vol. 26, no 10, 244 p. [ DOI : 10.1186/1471-2164-10-244 ]

    http://hal.inria.fr/inria-00429804
  • 7C. Guziolowski, S. Videla, F. Eduati, S. Thiele, T. Cokelaer, A. Siegel, J. Saez-Rodriguez.

    Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming, in: Bioinformatics, August 2013, vol. 29, no 18, pp. 2320-2326. [ DOI : 10.1093/bioinformatics/btt393 ]

    http://hal.inria.fr/hal-00853704
  • 8J. Nicolas, P. Durand, G. Ranchy, S. Tempel, A.-S. Valin.

    Suffix-Tree Analyser (STAN): looking for nucleotidic and peptidic patterns in genomes, in: Bioinformatics (Oxford, England), 2005, vol. 21, pp. 4408-4410.

    http://hal.archives-ouvertes.fr/hal-00015234
  • 9S. Prigent, G. Collet, S. M. Dittami, L. Delage, F. Ethis de Corny, O. Dameron, D. Eveillard, S. Thiele, J. Cambefort, C. Boyen, A. Siegel, T. Tonon.

    The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond, in: Plant Journal, September 2014, pp. 367-81. [ DOI : 10.1111/tpj.12627 ]

    https://hal.archives-ouvertes.fr/hal-01057153
  • 10C. Rousseau, M. Gonnet, M. Le Romancer, J. Nicolas.

    CRISPI: a CRISPR interactive database, in: Bioinformatics, 2009, vol. 25, no 24, pp. 3317-3318.
Publications of the year

Doctoral Dissertations and Habilitation Theses

  • 11A. Antoine-Lorquin, A. Siegel, C. Belleannée.

    Interest of grammatical modelling to achieve pattern matching in genomic sequences, Université de Rennes 1, December 2016.

    https://hal.inria.fr/tel-01416734
  • 12O. Dameron.

    Ontology-based methods for analyzing life science data, Univ. Rennes 1, January 2016, Habilitation à diriger des recherches.

    https://hal.inria.fr/tel-01403371

Articles in International Peer-Reviewed Journals

  • 13V. Acuña, A. Aravena, C. Guziolowski, D. Eveillard, A. Siegel, A. Maass.

    Deciphering transcriptional regulations coordinating the response to environmental changes, in: BMC Bioinformatics, January 2016, vol. 17, no 1, pp. 129-42.

    https://hal.archives-ouvertes.fr/hal-01260866
  • 14V. Berthé, J. Bourdon, T. Jolivet, A. Siegel.

    A combinatorial approach to products of Pisot substitutions, in: Ergodic Theory and Dynamical Systems, 2016, vol. 36, no 6, pp. 1757-1794. [ DOI : 10.1017/etds.2014.141 ]

    https://hal.inria.fr/hal-01196326
  • 15P. Bordron, M. Latorre, M.-P. Cortés, M. González, S. Thiele, A. Siegel, A. Maass, D. Eveillard.

    Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach, in: MicrobiologyOpen, January 2016, vol. 5, no 1, pp. 106-17.

    https://hal.archives-ouvertes.fr/hal-01289230
  • 16M. Boutet, L. Gauthier, M. Leclerc, G. Gros, V. De Montpreville, N. Théret, E. Donnadieu, F. Mami-Chouaib.

    TGF-β signaling intersects with CD103 integrin signaling to promote T lymphocyte accumulation and antitumor activity in the lung tumor microenvironment, in: Cancer Research, 2016, vol. 76, no 7, pp. 1757-69. [ DOI : 10.1158/0008-5472.CAN-15-1545 ]

    https://hal-univ-rennes1.archives-ouvertes.fr/hal-01282442
  • 17F. J. Cousin, S. Jouan-Lanhouet, N. Théret, C. Brenner, E. Jouan, G. Le Moigne-Muller, M.-T. Dimanche-Boitrel, G. Jan.

    The probiotic Propionibacterium freudenreichii as a new adjuvant for TRAIL-based therapy in colorectal cancer, in: Oncotarget, January 2016. [ DOI : 10.18632/oncotarget.6881 ]

    https://hal-univ-rennes1.archives-ouvertes.fr/hal-01259215
  • 18P. Finet, B. Gibaud, O. Dameron, R. Lebouquin Jeannes.

    Relevance of health level 7 clinical document architecture and integrating the healthcare enterprise cross-enterprise document sharing profile for managing chronic wounds in a telemedicine context, in: Healthcare Technology Letter , 2016, vol. 3, no 1, pp. 22-26. [ DOI : 10.1049/htl.2015.0053 ]

    https://hal.archives-ouvertes.fr/hal-01301007
  • 19C. Galiez, M. Christophe, F. Coste, P. Baldi.

    VIRALpro: a tool to identify viral capsid and tail sequences, in: Bioinformatics, 2016. [ DOI : 10.1093/bioinformatics/btv727 ]

    https://hal.archives-ouvertes.fr/hal-01242251
  • 20F. Gondret, A. Vincent, M. Houée-Bigot, A. Siegel, S. Lagarrigue, I. Louveau, D. Causeur.

    Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location, in: BMC Genomics, December 2016, vol. 17, no 1, article number 120. [ DOI : 10.1186/s12864-016-2438-3 ]

    https://hal.archives-ouvertes.fr/hal-01286555
  • 21M.-A. Laurent, D. Bonnier, N. Théret, P. Tufféry, G. Moroy.

    In silico characterization of the interaction between LSKL peptide, a LAP-TGF-beta derived peptide, and ADAMTS1, in: Computational Biology and Chemistry, April 2016, pp. 155-161. [ DOI : 10.1016/j.compbiolchem.2016.01.012 ]

    https://hal.inria.fr/hal-01401685
  • 22G. Nicolas, D. Wallon, C. Charbonnier, O. Quenez, S. Rousseau, A.-C. Richard, A. Rovelet-Lecrux, S. Coutant, K. Le Guennec, D. Bacq, J.-G. Garnier, R. Olaso, A. Boland, V. MEYER, J.-F. Deleuze, H. M. Munter, G. Bourque, D. Auld, A. Montpetit, M. Lathrop, L. Guyant-Maréchal, O. Martinaud, J. Pariente, A. Rollin-Sillaire, F. Pasquier, I. Le Ber, M. Sarazin, B. Croisile, C. Boutoleau-Bretonnière, C. Thomas-Antérion, C. Paquet, M. Sauvee, O. Moreaud, A. Gabelle, F. Sellal, M. Ceccaldi, L. Chamard, F. Blanc, T. Frebourg, D. Campion, D. Hannequin.

    Screening of dementia genes by whole-exome sequencing in early-onset Alzheimer disease: input and lessons, in: European Journal of Human Genetics, May 2016, vol. 24, no 5, pp. 710-716. [ DOI : 10.1038/ejhg.2015.173 ]

    https://hal.archives-ouvertes.fr/hal-01431285
  • 23M. Ostrowski, L. Paulevé, T. Schaub, A. Siegel, C. Guziolowski.

    Boolean Network Identification from Perturbation Time Series Data combining Dynamics Abstraction and Logic Programming, in: BioSystems, 2016. [ DOI : 10.1016/j.biosystems.2016.07.009 ]

    https://hal.archives-ouvertes.fr/hal-01354075
  • 24V. Picard, O. Mulner-Lorillon, J. Bourdon, J. Morales, P. Cormier, A. Siegel, R. Bellé.

    Model of the delayed translation of cyclin B maternal mRNA after sea urchin fertilization, in: Molecular Reproduction and Development, 2016. [ DOI : 10.1002/mrd.22746 ]

    http://hal.upmc.fr/hal-01390047
  • 25A. Rosier, P. Mabo, L. Temal, P. Van Hille, O. Dameron, L. Deléger, C. Grouin, P. Zweigenbaum, J. Jacques, E. Chazard, L. Laporte, C. Henry, A. Burgun.

    Personalized and automated remote monitoring of atrial fibrillation, in: EP-Europace, 2016, vol. 18, no 3, pp. 347-352. [ DOI : 10.1093/europace/euv234 ]

    https://hal-univ-rennes1.archives-ouvertes.fr/hal-01331019
  • 26A. Rosier, P. Mabo, L. Temal, P. Van Hille, O. Dameron, L. Deléger, C. Grouin, P. Zweigenbaum, J. Jacques, E. Chazard, L. Laporte, C. Henry, A. Burgun.

    Remote Monitoring of Cardiac Implantable Devices: Ontology Driven Classification of the Alerts, in: Studies in Health Technology and Informatics, 2016, vol. 221, pp. 59–63. [ DOI : 10.3233/978-1-61499-633-0-59 ]

    https://hal-univ-rennes1.archives-ouvertes.fr/hal-01319949
  • 27S. Swarup Samal, A. Naldi, D. Grigoriev, A. Weber, N. Théret, O. Radulescu.

    Geometric analysis of pathways dynamics: application to versatility of TGF-β receptors, in: BioSystems, July 2016, vol. 149, pp. 3–14. [ DOI : 10.1016/j.biosystems.2016.07.004 ]

    https://hal.inria.fr/hal-01379033
  • 28S. Videla, J. Saez-Rodriguez, C. Guziolowski, A. Siegel.

    caspo: a toolbox for automated reasoning on the response of logical signaling networks families, in: Bioinformatics, 2016. [ DOI : 10.1093/bioinformatics/btw738 ]

    https://hal.inria.fr/hal-01426880

International Conferences with Proceedings

  • 29T. Guyet, Y. Moinard, J. Nicolas, R. Quiniou.

    Packing graphs with ASP for landscape simulation, in: IJCAI 2016 - 25th International joint conference on artificial intelligence, New-york, United States, AAAI, July 2016, 8 p.

    https://hal.inria.fr/hal-01327368

National Conferences with Proceedings

  • 30Y. Rivault, N. Le Meur, O. Dameron.

    Complications post-opératoires et mode de prise en charge en angioplastie : apport du Programme de Médicalisation des Systèmes d'Information (PMSI), in: Congrès Adelf-Epiter 2016, Rennes, France, September 2016.

    https://hal.inria.fr/hal-01389688
  • 31Y. Rivault, N. Le Meur, O. Dameron.

    La gestion de données médico-administratives grâce aux outils du Web sémantique, in: Journées ADELF-EMOIS « Système d’information hospitalier et Epidémiologie », Dijon, France, Revue d'Épidémiologie et de Santé Publique, March 2016, vol. 64, no Supplement 1, S15 p. [ DOI : 10.1016/j.respe.2016.01.051 ]

    https://hal.archives-ouvertes.fr/hal-01297389

Conferences without Proceedings

  • 32A. Antoine-Lorquin, F. Mahé, M. Dunthorn, C. Belleannée.

    Impact de la recherche d'amorces mutées sur les résultats d'analyses métagénomiques, in: Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Rennes, France, Jobim-2016, Société Française de Bioinformatique (SFBI), June 2016.

    https://hal.archives-ouvertes.fr/hal-01343121
  • 33F. Balusson, M.-A. Botrel, O. Dameron, Y. Dauxais, E. Drezen, A. Dupuy, T. Guyet, D. Gross-Amblard, A. Happe, N. Le Meur, B. Le Nautout, E. Leray, E. Nowak, C. Rault, E. Oger, E. Polard.

    PEPS: a platform for supporting studies in pharmaco-epidemiology using medico-administrative databases, in: International Congress on e-Health Research, Paris, France, October 2016.

    https://hal.inria.fr/hal-01380939
  • 34M. Chevallier, M. Aite, J. Got, G. Collet, N. Loira, M.-P. Cortés, C. Frioux, J. Laniau, C. Trottier, A. Maass, A. Siegel.

    Handling the heterogeneity of genomic and metabolic networks data within flexible workflows with the PADMet toolbox, in: Jobim 2016 : 17ème Journées Ouvertes en Biologie, Informatique et Mathématiques, Lyon, France, June 2016.

    https://hal.inria.fr/hal-01377844
  • 35F. Coste, M. Demirdelen.

    A refined parsing graph approach to learn smaller contextually substitutable grammars with less data, in: ICGI 2016 - 13th International Conference on Grammatical Inference, Delft, Netherlands, October 2016.

    https://hal.inria.fr/hal-01406337
  • 36W. Dyrka, F. Coste, O. Unold, L. Culer, A. Kaczmarek.

    How to measure the topological quality of protein grammars?, in: ICGI 2016 - 13th International Conference on Grammatical Inference, Delft, Netherlands, October 2016.

    https://hal.inria.fr/hal-01406331
  • 37F. Legeai, C. Bettembourg, A. Bretaudeau, Y. Chaussin, O. Dameron, D. Tagu.

    BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction, in: XXVth International Congress of Entomology 2016,, Orlando, Florida, United States, September 2016.

    https://hal.inria.fr/hal-01391080
  • 38F. Moreews, O. Sallou, O. Collin.

    An application suite based on the IFB Container as a Service platform, in: ECCB 2016, Den Haag, Netherlands, ISCB, September 2016.

    https://hal.inria.fr/hal-01394295
  • 39A. Siegel.

    A system biology loop for the identification of boolean networks to model signaling networks. , in: European Conference on Mathematical and Theoretical Biology, Nottingham, France, 2016.

    https://hal.inria.fr/hal-01399456

Scientific Books (or Scientific Book chapters)

  • 40F. Coste.

    Learning the Language of Biological Sequences, in: Topics in Grammatical Inference, J. Heinz, J. M. Sempere (editors), Springer-Verlag, 2016. [ DOI : 10.1007/978-3-662-48395-4_8 ]

    https://hal.inria.fr/hal-01244770

Other Publications

  • 41F. Cousin, S. Jouan-Lanhouet, N. Théret, C. Brenner, E. Jouan, G. Le Moigne-Muller, M.-T. Dimanche-Boitrel.

    The probiotic [i]Propionibacteriumfreudenreichii[/i] as a new adjuvant for TRAIL-based therapy in colorectal cancer, September 2016, 4 . International Symposium on Propionibacteria and Bibfidobacteria , Poster.

    https://hal.archives-ouvertes.fr/hal-01372131
  • 42F. Cousin, S. Jouan-Lanhouet, N. Théret, C. Brenner, E. Jouan, G. Le Moigne-Muller, M.-T. Dimanche-Boitrel, G. Jan.

    The probiotic [i]Propionibacterium freudenreichii[/i] as a new adjuvant for TRAIL-based therapy in colorectal cancer, June 2016, International Scientific Conference on Probiotics and Prebiotics - IPC2016, Poster.

    https://hal.archives-ouvertes.fr/hal-01286497
  • 43M. Demirdelen.

    Fast parser for biological sequences and a new algorithm for the inference of substitutable languages, Univ. Rennes 1, June 2016.

    https://hal.inria.fr/hal-01406352
  • 44A. Evrard, C. Bettembourg, O. Dameron, O. Filangi, A. Bretaudeau, F. F. Legeai, R. Delourme, M. Manzanares-Dauleux, M. Jubault.

    Comparative genomic analysis of Clubroot resistance in the Brassicaceae family, October 2016, Brassica2016, Poster.

    https://hal.inria.fr/hal-01391707
  • 45A. Evrard, C. Bettembourg, M. M. Jubault, O. Dameron, O. Filangi, A. Bretaudeau, F. F. Legeai.

    Integration and query of biological datasets with Semantic Web technologies: AskOmics, June 2016, Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2016), Poster.

    https://hal.inria.fr/hal-01391087
  • 46S. Rémy.

    Apprentissage profond et acquisition de représentations latentes de séquences peptidiques, ENS Rennes, August 2016.

    https://hal.inria.fr/hal-01406368
References in notes
  • 47O. Abdou-Arbi, S. Lemosquet, J. Van Milgen, A. Siegel, J. Bourdon.

    Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs, in: BMC Systems Biology, 2014, vol. 8, no 1, 8 p. [ DOI : 10.1186/1752-0509-8-8 ]

    https://hal.inria.fr/hal-00947219
  • 48V. Acuña, A. Aravena, A. Maass, A. Siegel.

    Modeling parsimonious putative regulatory networks: complexity and heuristic approach, in: 15th conference in Verification, Model Checking, and Abstract Interpretation, San Diego, United States, Springer, 2014, vol. 8318, pp. 322-336. [ DOI : 10.1007/978-3-642-54013-4_18 ]

    https://hal.inria.fr/hal-00926477
  • 49G. Andrieux, M. Le Borgne, N. Théret.

    An integrative modeling framework reveals plasticity of TGF-Beta signaling, in: BMC Systems Biology, 2014, vol. 8, no 1, 30 p. [ DOI : 10.1186/1752-0509-8-30 ]

    http://www.hal.inserm.fr/inserm-00978313
  • 50C. Baral.

    Knowledge Representation, Reasoning and Declarative Problem Solving, Cambridge University Press, 2010.
  • 51T. Baumuratova, D. Surdez, B. Delyon, G. Stoll, O. Delattre, O. Radulescu, A. Siegel.

    Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network, in: BMC Systems Biology, 2010, vol. 4, no 1, 146 p. [ DOI : 10.1186/1752-0509-4-146 ]

    http://www.hal.inserm.fr/inserm-00984711
  • 52R. Bellazzi.

    Big Data and Biomedical Informatics: A Challenging Opportunity, in: Yearbook of medical informatics, 2014, vol. 9, no 1, In press.
  • 53R. Bellazzi, M. Diomidous, I. N. Sarkar, K. Takabayashi, A. Ziegler, A. T. McCray.

    Data analysis and data mining: current issues in biomedical informatics, in: Methods of information in medicine, 2011, vol. 50, no 6, pp. 536–544.
  • 54C. Belleannée, O. Sallou, J. Nicolas.

    Logol: Expressive Pattern Matching in sequences. Application to Ribosomal Frameshift Modeling, in: PRIB2014 - Pattern Recognition in Bioinformatics, 9th IAPR International Conference, Stockholm, Sweden, M. Comin, L. Kall, E. Marchiori, A. Ngom, J. Rajapakse (editors), Springer International Publishing, August 2014, vol. 8626, pp. 34-47. [ DOI : 10.1007/978-3-319-09192-1_4 ]

    https://hal.inria.fr/hal-01059506
  • 55R. Bellé, S. Prigent, A. Siegel, P. Cormier.

    Model of cap-dependent translation initiation in sea urchin: a step towards the eukaryotic translation regulation network, in: Molecular Reproduction and Development, 2010, vol. 77, no 3, pp. 257-64.
  • 56R. Bendaoud, A. Napoli, Y. Toussaint.

    Formal Concept Analysis: A Unified Framework for Building and Refining Ontologies, in: Knowledge Engineering: Practice and Patterns, 16th International Conference, EKAW 2008, Acitrezza, Italy, September 29 - October 2, 2008. Proceedings, A. Gangemi, J. Euzenat (editors), Lecture Notes in Computer Science, Springer, 2008, vol. 5268, pp. 156-171.

    http://dx.doi.org/10.1007/978-3-540-87696-0_16
  • 57C. Bettembourg, C. Diot, O. Dameron.

    Optimal threshold determination for interpreting semantic similarity and particularity, in: PLoS ONE, 2015, vol. 10, no 7, e0133579. [ DOI : 10.1371/journal.pone.0133579 ]

    https://hal.archives-ouvertes.fr/hal-01207763
  • 58C. Bettembourg, C. Diot, O. Dameron.

    Optimal Threshold Determination for Interpreting Semantic Similarity and Particularity: Application to the Comparison of Gene Sets and Metabolic Pathways Using GO and ChEBI, in: PLoS ONE, 2015, 30 p. [ DOI : 10.1371/journal.pone.0133579 ]

    https://hal.inria.fr/hal-01184934
  • 59C. Bizer, T. Heath, T. Berners Lee.

    Linked Data–The story so far, in: International Journal on Semantic Web and Information Systems, 2009, vol. 5, no 3, pp. 1–22.
  • 60J. A. Blake, C. J. Bult.

    Beyond the data deluge: Data integration and bio-ontologies, in: Journal of Biomedical Informatics, 2006, vol. 39, no 3, pp. 314–320.
  • 61P. Blavy, F. Gondret, S. Lagarrigue, J. Van Milgen, A. Siegel.

    Using a large-scale knowledge database on reactions and regulations to propose key upstream regulators of various sets of molecules participating in cell metabolism, in: BMC Systems Biology, 2014, vol. 8, no 1, 32 p. [ DOI : 10.1186/1752-0509-8-32 ]

    https://hal.inria.fr/hal-00980499
  • 62P. Bordron, D. Eveillard, A. Maass, A. Siegel.

    An ASP application in integrative biology: identification of functional gene units, in: LPNMR - 12th Conference on Logic Programming and Nonmonotonic Reasoning - 2013, Corunna, Spain, September 2013.

    http://hal.inria.fr/hal-00853762
  • 63H. Chen, T. Yu, J. Y. Chen.

    Semantic Web meets Integrative Biology: a survey, in: Briefings in bioinformatics, 2012, vol. 14, no 1, pp. 109–125.
  • 64G. Collet, D. Eveillard, M. Gebser, S. Prigent, T. Schaub, A. Siegel, S. Thiele.

    Extending the Metabolic Network of Ectocarpus Siliculosus using Answer Set Programming, in: LPNMR - 12th Conference on Logic Programming and Nonmonotonic Reasoning - 2013, Corunna, Spain, September 2013.

    http://hal.inria.fr/hal-00853752
  • 65F. Coste, G. Garet, A. Groisillier, J. Nicolas, T. Tonon.

    Automated Enzyme classification by Formal Concept Analysis, in: ICFCA - 12th International Conference on Formal Concept Analysis, Cluj-Napoca, Romania, Springer, June 2014.

    https://hal.inria.fr/hal-01063727
  • 66S. Daminelli, V. J. Haupt, M. Reimann, M. Schroeder.

    Drug repositioning through incomplete bi-cliques in an integrated drug-target-disease network, in: Integr. Biol., 2012, vol. 4, pp. 778-788.

    http://dx.doi.org/10.1039/C2IB00154C
  • 67O. Demeure, F. Lecerf, C. Duby, C. Desert, S. Ducheix, H. Guillou, S. Lagarrigue.

    Regulation of LPCAT3 by LXR, in: Gene, Jan 2011, vol. 470, no 1-2, pp. 7–11.
  • 68S. M. Dittami, T. Barbeyron, C. Boyen, J. Cambefort, G. Collet, L. Delage, A. Gobet, A. Groisillier, C. Leblanc, G. Michel, D. Scornet, A. Siegel, J. E. Tapia, T. Tonon.

    Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae, in: Frontiers in Genetics, 2014, vol. 5, 241 p. [ DOI : 10.3389/fgene.2014.00241 ]

    https://hal.inria.fr/hal-01079739
  • 69M. Gebser, R. Kaminski, B. Kaufmann, T. Schaub.

    Answer Set Solving in Practice, Synthesis Lectures on Artificial Intelligence and Machine Learning, Morgan and Claypool Publishers, 2012.
  • 70F. Gondret, I. Louveau, M. Houee, D. Causeur, A. Siegel.

    Data integration, in: Meeting INRA-ISU, Ames, United States, March 2015, 11 p.

    https://hal.archives-ouvertes.fr/hal-01210940
  • 71F. Gondret, A. Vincent, M. Houee, S. Lagarrigue, A. Siegel, D. Causeur, I. Louveau.

    Integrative responses of pig adipose tissues to high-fat high-fiber diet: towards key regulators of energy flexibility, March 2015, ASAS/ADSA midwest meeting, Poster.

    https://hal.archives-ouvertes.fr/hal-01210925
  • 72F. Herault, A. Vincent, O. Dameron, P. Le Roy, P. Cherel, M. Damon.

    The longissimus and semimembranosus muscles display marked differences in their gene expression profiles in pig, in: PLoS ONE, 2014, vol. 9, no 5, e96491. [ DOI : 10.1371/journal.pone.0096491 ]

    https://hal.inria.fr/hal-00989635
  • 73R. Kaminski, A. Siegel, T. Schaub, S. Videla.

    Minimal Intervention Strategies in Logical Signaling Networks with ASP, in: Theory and Practice of Logic Programming, September 2013, vol. 13, no Special issue 4-5, pp. 675-690. [ DOI : 10.1017/S1471068413000422 ]

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  • 74S. Laurent, A. Richard, O. Mulner-Lorillon, J. Morales, D. Flament, V. Glippa, J. Bourdon, P. Gosselin, A. Siegel, P. Cormier, R. Bellé.

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