BONSAI - 2018 - Annual activity report

BONSAI

BONSAI - 2018

Project-Team Bonsai

Team, Visitors, External Collaborators

Overall Objectives

Presentation

Research Program

Sequence processing for Next Generation Sequencing
Noncoding RNA
Genome structures
Nonribosomal peptides

Highlights of the Year

New Software and Platforms

BCALM 2
NORINE
Vidjil
MATAM

New Results

Exploration of transcriptomes
Modeling of alternative transcripts with long reads
Read against read comparison for Nanopore data
Annotation of the OC43 coronavirus genome
Small RNAs catalog in oilseed rape
Identifying systematic sequencing errors
Indexing labelled sequences
Tree representations
Co-linear chaining on graphs
Representations of de Bruijn graphs
Readability of overlap graphs
Nonribosomal peptides

Partnerships and Cooperations

National Initiatives
European Initiatives
International Research Visitors

Dissemination

Promoting Scientific Activities
Teaching - Supervision - Juries
Popularization

Bibliography

Publications of the year

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2018 Project-Team Activity Report

BONSAI

Bioinformatics and Sequence Analysis

Research centre: Lille - Nord Europe

In partnership with: CNRS, Université des sciences et technologies de Lille (Lille 1)

In collaboration with: Centre de Recherche en Informatique, Signal et Automatique de Lille

Field: Digital Health, Biology and Earth

Theme: Computational Biology

Keywords:

Computer Science and Digital Science:

A7.1. - Algorithms
A8.1. - Discrete mathematics, combinatorics
A8.7. - Graph theory

Other Research Topics and Application Domains:

B1.1.5. - Immunology
B1.1.6. - Evolutionnary biology
B1.1.7. - Bioinformatics
B1.1.11. - Plant Biology
B2.2.3. - Cancer