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  • The Inria's Research Teams produce an annual Activity Report presenting their activities and their results of the year. These reports include the team members, the scientific program, the software developed by the team and the new results of the year. The report also describes the grants, contracts and the activities of dissemination and teaching. Finally, the report gives the list of publications of the year.

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Section: New Results

Modeling of alternative transcripts with long reads

In the context of transcriptomic analyses based on third generation sequencing data (ONT), we started to explore the following problem : given a transcriptomic experiment, a gene of interest, select reads related to the given gene and find exon junctions. As we have done in the CG-Alcode project, we aim to model the gene as an alphabet of exonic blocks, each transcript being a word over this alphabet. This work takes place in the context of ANR ASTER for which we deal with mouse transcriptomic data in brain and liver. Built models will allow to query human genes to discover putative transcripts.