Section: New Results

Indexing labelled sequences

We designed a compressed full-text index structure able to index a whole text with labels attached to every letter in the text [6]. This work will be applied to DNA sequences and more precisely V(D)J recombinations which are complex genomic rearrangements occurring in lymphocytes. The index will be used to index labelled V(D)J recombinations, which are labelled with their V, D and J gene. As the index we conceived is scalable, we will index V(D)J recombinations from thousands of samples and give access to this data through the Vidjil platform.