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  • The Inria's Research Teams produce an annual Activity Report presenting their activities and their results of the year. These reports include the team members, the scientific program, the software developed by the team and the new results of the year. The report also describes the grants, contracts and the activities of dissemination and teaching. Finally, the report gives the list of publications of the year.

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Bibliography

Publications of the year

Doctoral Dissertations and Habilitation Theses

Articles in International Peer-Reviewed Journals

  • 5O. Angulo, F. Crauste, J. López-Marcos.

    Numerical integration of an erythropoiesis model with explicit growth factor dynamics, in: Journal of Computational and Applied Mathematics, March 2018, vol. 330, pp. 770 - 782. [ DOI : 10.1016/j.cam.2017.01.033 ]

    https://hal.inria.fr/hal-01646786
  • 6O. Angulo, O. Gandrillon, F. Crauste.

    Investigating the role of the experimental protocol in phenylhydrazine-induced anemia on mice recovery, in: Journal of Theoretical Biology, January 2018, vol. 437, pp. 286 - 298. [ DOI : 10.1016/j.jtbi.2017.10.031 ]

    https://hal.inria.fr/hal-01646792
  • 7L. Barbarroux, P. Michel, M. Adimy, F. Crauste.

    A multiscale model of the CD8 T cell immune response structured by intracellular content, in: Discrete and Continuous Dynamical Systems - Series B (DCDS-B), November 2018, vol. 23, no 9, pp. 3969-4002.

    https://hal.inria.fr/hal-01969237
  • 8V. A. Belyaev, J. L. Dunster, J. M. Gibbins, M. Panteleev, V. Volpert.

    Modeling thrombosis in silico: Frontiers, challenges, unresolved problems and milestones, in: Physics of Life Reviews, November 2018, vol. 26-27, pp. 57-95. [ DOI : 10.1016/j.plrev.2018.02.005 ]

    https://hal.archives-ouvertes.fr/hal-01941469
  • 9N. Bessonov, A. Beuter, S. Trofimchuk, V. Volpert.

    Estimate of the travelling wave speed for an integro-differential equation, in: Applied Mathematics Letters, February 2019, vol. 88, pp. 103-110. [ DOI : 10.1016/j.aml.2018.07.037 ]

    https://hal.archives-ouvertes.fr/hal-01941455
  • 10N. Bessonov, N. Reinberg, M. Banerjee, V. Volpert.

    The Origin of Species by Means of Mathematical Modelling, in: Acta Biotheoretica, December 2018, vol. 66, no 4, pp. 333-344. [ DOI : 10.1007/s10441-018-9328-9 ]

    https://hal.archives-ouvertes.fr/hal-01941452
  • 11A. Beuter, A. Balossier, S. Trofimchuk, V. Volpert.

    Modeling of post-stroke stimulation of cortical tissue, in: Mathematical Biosciences, November 2018, vol. 305, pp. 146-159. [ DOI : 10.1016/j.mbs.2018.08.014 ]

    https://hal.archives-ouvertes.fr/hal-01941460
  • 12G. Bocharov, A. Meyerhans, N. Bessonov, S. Trofimchuk, V. Volpert.

    Interplay between reaction and diffusion processes in governing the dynamics of virus infections, in: Journal of Theoretical Biology, November 2018, vol. 457, pp. 221-236. [ DOI : 10.1016/j.jtbi.2018.08.036 ]

    https://hal.archives-ouvertes.fr/hal-01941458
  • 13L. Boullu, M. Adimy, F. Crauste, L. Pujo-Menjouet.

    Oscillations and asymptotic convergence for a delay differential equation modeling platelet production, in: Discrete and Continuous Dynamical Systems - Series B, 2018, pp. 1-27.

    https://hal.inria.fr/hal-01835435
  • 14I. S. Ciuperca, M. Dumont, A. Lakmeche, P. Mazzocco, L. Pujo-Menjouet, H. Rezaei, L. M. Tine.

    Alzheimer's disease and prion: analysis of an in vitro mathematical model, in: Discrete and Continuous Dynamical Systems - Series B (DCDS-B), 2018.

    https://hal.inria.fr/hal-01368862
  • 15T. Galochkina, M. Marion, V. Volpert.

    Initiation of reaction–diffusion waves of blood coagulation, in: Physica D: Nonlinear Phenomena, August 2018, vol. 376-377, pp. 160-170. [ DOI : 10.1016/j.physd.2017.11.006 ]

    https://hal.archives-ouvertes.fr/hal-01941465
  • 16S. Girel, F. Crauste.

    Existence and stability of periodic solutions of an impulsive differential equation and application to CD8 T-cell differentiation, in: Journal of Mathematical Biology, June 2018, vol. 76, no 7, pp. 1765-1795, https://arxiv.org/abs/1803.01674. [ DOI : 10.1007/s00285-018-1220-3 ]

    https://hal.archives-ouvertes.fr/hal-01721728
  • 17M. Helal, A. Igel-Egalon, A. Lakmeche, P. Mazzocco, A. Perrillat-Mercerot, L. Pujo-Menjouet, H. Rezaei, L. Matar Tine.

    Stability analysis of a steady state of a model describing Alzheimer’s disease and interactions with prion proteins, in: Journal of Mathematical Biology, August 2018, pp. 1-25. [ DOI : 10.1007/s00285-018-1267-1 ]

    https://hal.archives-ouvertes.fr/hal-01946610
  • 18H. B. Huttner, O. Bergmann, M. Salehpour, R. E. Cheikh, M. Nakamura, A. Tortora, P. Heinke, R. Coras, E. Englund, I. Y. Eyüpoglu, J. B. Kuramatsu, S. S. Roeder, S. P. Kloska, I. Muehlen, A. Doerfler, S. Schwab, G. Possnert, S. Bernard, J. Frisén.

    Meningioma growth dynamics assessed by radiocarbon retrospective birth dating, in: EBioMedicine, 2018, vol. 27, pp. 176–181. [ DOI : 10.1016/j.ebiom.2017.12.020 ]

    https://hal.archives-ouvertes.fr/hal-01671339
  • 19P. Lemarre, L. Pujo-Menjouet, S. S. Sindi.

    Generalizing a mathematical model of prion aggregation allows strain coexistence and co-stability by including a novel misfolded species, in: Journal of Mathematical Biology, 2018. [ DOI : 10.1007/s00285-018-1280-4 ]

    https://hal.archives-ouvertes.fr/hal-01858724
  • 20L. Matar Tine, B. Lèye.

    Analysis and numerical simulation of a polymerization model with aggregation and Ostwald ripening for the growth phenomenon, in: Acta Applicandae Mathematicae, October 2018, pp. 1-28. [ DOI : 10.1007/s10440-018-0222-x ]

    https://hal.archives-ouvertes.fr/hal-01933553
  • 21M. Sen, V. Volpert, V. Vougalter.

    Existence of waves for a reaction–diffusion–dispersion system, in: Nonlinear Analysis: Theory, Methods and Applications, March 2019, vol. 180, pp. 52-66. [ DOI : 10.1016/j.na.2018.09.011 ]

    https://hal.archives-ouvertes.fr/hal-01941461
  • 22S. Trofimchuk, V. Volpert.

    Traveling Waves for a Bistable Reaction-Diffusion Equation with Delay, in: SIAM Journal on Mathematical Analysis, January 2018, vol. 50, no 1, pp. 1175-1199. [ DOI : 10.1137/17M1115587 ]

    https://hal.archives-ouvertes.fr/hal-01941474
  • 23G. Vogin, T. Bastogne, L. Bodgi, J. Gillet-Daubin, A. Canet, S. Pereira, N. Foray.

    The pATM Immunofluorescence assay: a high-performance radiosensitivity assay to predict post radiotherapy overreactions, in: International Journal of Radiation Oncology - Biology - Physics, July 2018, vol. 101, no 3, pp. 690–693. [ DOI : 10.1016/j.ijrobp.2018.03.047 ]

    https://hal.archives-ouvertes.fr/hal-01757771
  • 24V. Vougalter, V. Volpert.

    On the Existence in the Sense of Sequences of Stationary Solutions for Some Systems of Non-Fredholm Integro-differential Equations, in: Mediterranean Journal of Mathematics, October 2018, vol. 15, no 5.

    https://hal.archives-ouvertes.fr/hal-01941463
  • 25V. Vougalter, V. Volpert.

    Solvability of Some Integro-Differential Equations with Anomalous Diffusion in Two Dimensions, in: Journal of Mathematical Sciences, December 2018, vol. 235, no 3, pp. 243-255. [ DOI : 10.1007/978-3-319-47512-7_9 ]

    https://hal.archives-ouvertes.fr/hal-01941457

Scientific Books (or Scientific Book chapters)

  • 26G. Bocharov, V. Volpert, B. Ludewig, A. Meyerhans.

    Mathematical Immunology of Virus Infections, Springer International Publishing, 2018, XV, 245 p. [ DOI : 10.1007/978-3-319-72317-4 ]

    https://hal.archives-ouvertes.fr/hal-01941475

Other Publications

References in notes
  • 29A. Besse, G. D. Clapp, S. Bernard, F. E. Nicolini, D. Levy, T. Lepoutre.

    Stability Analysis of a Model of Interaction Between the Immune System and Cancer Cells in Chronic Myelogenous Leukemia, in: Bulletin of Mathematical Biology, 2017, pp. 1–27. [ DOI : 10.1007/s11538-017-0272-7 ]

    https://hal.archives-ouvertes.fr/hal-01539364
  • 30A. Besse, T. Lepoutre, S. Bernard.

    Long-term treatment effects in chronic myeloid leukemia, in: Journal of Mathematical Biology, 2017, pp. 1-26. [ DOI : 10.1007/s00285-017-1098-5 ]

    https://hal.archives-ouvertes.fr/hal-01447781
  • 31G. D. Clapp, T. Lepoutre, R. El Cheikh, S. Bernard, J. Ruby, H. Labussière-Wallet, F. E. Nicolini, D. Levy.

    Implication of the Autologous Immune System in BCR-ABL Transcript Variations in Chronic Myelogenous Leukemia Patients Treated with Imatinib., in: Cancer Research, October 2015, vol. 75, no 19, pp. 4053-62. [ DOI : 10.1158/0008-5472.CAN-15-0611 ]

    https://hal.inria.fr/hal-01251396
  • 32F. Crauste, J. Mafille, L. Boucinha, S. Djebali, O. Gandrillon, J. Marvel, C. Arpin.

    Identification of Nascent Memory CD8 T Cells and Modeling of Their Ontogeny, in: Cell Systems, February 2017, vol. 4, no 3, pp. 306-317. [ DOI : 10.1016/j.cels.2017.01.014 ]

    https://hal.inria.fr/hal-01409637
  • 33F. Crauste, L. Pujo-Menjouet, S. Génieys, C. Molina, O. Gandrillon.

    Adding self-renewal in committed erythroid progenitors improves the biological relevance of a mathematical model of erythropoiesis, in: Journal of theoretical biology, 2008, vol. 250, no 2, pp. 322–338.
  • 34U. Herbach, A. Bonnaffoux, T. Espinasse, O. Gandrillon.

    Inferring gene regulatory networks from single-cell data: a mechanistic approach, in: BMC Systems Biology, November 2017, vol. 11, no 1, 105 p. [ DOI : 10.1186/s12918-017-0487-0 ]

    https://hal.archives-ouvertes.fr/hal-01646910