New Software and Platforms
New Software and Platforms


Publications of the year

Articles in International Peer-Reviewed Journals

  • 1A. Baudier, F. Fages, S. Soliman.

    Graphical Requirements for Multistationarity in Reaction Networks and their Verification in BioModels, in: Journal of Theoretical Biology, December 2018, vol. 459, pp. 79–89, https://arxiv.org/abs/1809.08891. [ DOI : 10.1016/j.jtbi.2018.09.024 ]

  • 2F. Boulier, F. Fages, O. Radulescu, S. S. Samal, A. Schuppert, W. M. Seiler, T. Sturm, S. Walcher, A. Weber.

    The SYMBIONT project: symbolic methods for biological networks, in: ACM Communications in Computer Algebra, September 2018, vol. 52, no 3, pp. 67-70. [ DOI : 10.1145/3313880.3313885 ]

  • 3A. Courbet, P. Amar, F. Fages, E. Renard, F. Molina.

    Computer‐aided biochemical programming of synthetic microreactors as diagnostic devices, in: Molecular Systems Biology, April 2018, vol. 14, no 4. [ DOI : 10.15252/msb.20177845 ]

  • 4F. Fages, T. Martinez, D. A. Rosenblueth, S. Soliman.

    Influence Networks compared with Reaction Networks: Semantics, Expressivity and Attractors, in: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, vol. PP, no 99, pp. 1-14. [ DOI : 10.1109/TCBB.2018.2805686 ]

  • 5J.-B. Lugagne, S. Jain, P. Ivanovitch, Z. Ben Meriem, C. Vulin, C. Fracassi, G. Batt, P. Hersen.

    Identification of individual cells from z-stacks of bright-field microscopy images, in: Scientific Reports, July 2018, vol. 8, no 1, 11455 p. [ DOI : 10.1038/s41598-018-29647-5 ]

  • 6H. Meredith, V. Andreani, H. Ma, A. Lopatkin, A. Lee, D. Anderson, G. Batt, L. You.

    Applying ecological resistance and resilience to dissect bacterial antibiotic responses, in: Science Advances , December 2018, vol. 4, no 12, eaau1873 p. [ DOI : 10.1126/sciadv.aau1873 ]


International Conferences with Proceedings

  • 7F. Fages, S. Soliman.

    On Robustness Computation and Optimization in BIOCHAM-4, in: 16th Int. Conf. on Computational Methods in Systems Biology, Brno, Czech Republic, September 2018, Long version with appendices. [ DOI : 10.1007/978-3-319-99429-1_18 ]


Scientific Books (or Scientific Book chapters)

  • 8F. Fages, G. Le Guludec.

    Biochemical Programs and Analog-Digital Mixed Algorithms in the Cell, in: Life Sciences, Information Sciences, John Wiley & Sons, Inc., March 2018, pp. 201-216. [ DOI : 10.1002/9781119452713.ch19 ]


Scientific Popularization

  • 9F. Molina, J.-H. Jiang, F. Fages.

    BIOPSY: Biochemical Programming System, November 2018, Festival Scientifique France Taiwan, ANR-MOST, Poster.


Other Publications

  • 10F. Boulier, F. Fages, O. Radulescu, S. S. Samal, A. Schuppert, W. M. Seiler, T. Sturm, S. Walcher, A. Weber.

    The SYMBIONT Project: Symbolic Methods for Biological Networks, August 2018, F1000Research 7:1341 (poster).

  • 11V. Singh, S. Pankaew, M. Ostaszewski, G. D. Kalliolias, S. Soliman, T. Helikar, A. Niarakis.

    Executable Disease Networks: Adding dynamics to molecular maps, September 2018, ECCB 2018, 17th European Conference on Computational Biology, Poster.