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  • The Inria's Research Teams produce an annual Activity Report presenting their activities and their results of the year. These reports include the team members, the scientific program, the software developed by the team and the new results of the year. The report also describes the grants, contracts and the activities of dissemination and teaching. Finally, the report gives the list of publications of the year.

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Bibliography

Publications of the year

Articles in International Peer-Reviewed Journals

  • 1A. Baudier, F. Fages, S. Soliman.

    Graphical Requirements for Multistationarity in Reaction Networks and their Verification in BioModels, in: Journal of Theoretical Biology, December 2018, vol. 459, pp. 79–89, https://arxiv.org/abs/1809.08891. [ DOI : 10.1016/j.jtbi.2018.09.024 ]

    https://hal.archives-ouvertes.fr/hal-01879735
  • 2F. Boulier, F. Fages, O. Radulescu, S. S. Samal, A. Schuppert, W. M. Seiler, T. Sturm, S. Walcher, A. Weber.

    The SYMBIONT project: symbolic methods for biological networks, in: ACM Communications in Computer Algebra, September 2018, vol. 52, no 3, pp. 67-70. [ DOI : 10.1145/3313880.3313885 ]

    https://hal.inria.fr/hal-02061018
  • 3A. Courbet, P. Amar, F. Fages, E. Renard, F. Molina.

    Computer‐aided biochemical programming of synthetic microreactors as diagnostic devices, in: Molecular Systems Biology, April 2018, vol. 14, no 4. [ DOI : 10.15252/msb.20177845 ]

    https://hal.inria.fr/hal-01779791
  • 4F. Fages, T. Martinez, D. A. Rosenblueth, S. Soliman.

    Influence Networks compared with Reaction Networks: Semantics, Expressivity and Attractors, in: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, vol. PP, no 99, pp. 1-14. [ DOI : 10.1109/TCBB.2018.2805686 ]

    https://hal.inria.fr/hal-01510216
  • 5J.-B. Lugagne, S. Jain, P. Ivanovitch, Z. Ben Meriem, C. Vulin, C. Fracassi, G. Batt, P. Hersen.

    Identification of individual cells from z-stacks of bright-field microscopy images, in: Scientific Reports, July 2018, vol. 8, no 1, 11455 p. [ DOI : 10.1038/s41598-018-29647-5 ]

    https://hal.archives-ouvertes.fr/hal-01898065
  • 6H. Meredith, V. Andreani, H. Ma, A. Lopatkin, A. Lee, D. Anderson, G. Batt, L. You.

    Applying ecological resistance and resilience to dissect bacterial antibiotic responses, in: Science Advances , December 2018, vol. 4, no 12, eaau1873 p. [ DOI : 10.1126/sciadv.aau1873 ]

    https://hal.inria.fr/hal-01950376

International Conferences with Proceedings

  • 7F. Fages, S. Soliman.

    On Robustness Computation and Optimization in BIOCHAM-4, in: 16th Int. Conf. on Computational Methods in Systems Biology, Brno, Czech Republic, September 2018, Long version with appendices. [ DOI : 10.1007/978-3-319-99429-1_18 ]

    https://hal.inria.fr/hal-01814854

Scientific Books (or Scientific Book chapters)

  • 8F. Fages, G. Le Guludec.

    Biochemical Programs and Analog-Digital Mixed Algorithms in the Cell, in: Life Sciences, Information Sciences, John Wiley & Sons, Inc., March 2018, pp. 201-216. [ DOI : 10.1002/9781119452713.ch19 ]

    https://hal.inria.fr/hal-01948714

Scientific Popularization

  • 9F. Molina, J.-H. Jiang, F. Fages.

    BIOPSY: Biochemical Programming System, November 2018, Festival Scientifique France Taiwan, ANR-MOST, Poster.

    https://hal.inria.fr/hal-01948702

Other Publications

  • 10F. Boulier, F. Fages, O. Radulescu, S. S. Samal, A. Schuppert, W. M. Seiler, T. Sturm, S. Walcher, A. Weber.

    The SYMBIONT Project: Symbolic Methods for Biological Networks, August 2018, F1000Research 7:1341 (poster).

    https://hal.inria.fr/hal-01889825
  • 11V. Singh, S. Pankaew, M. Ostaszewski, G. D. Kalliolias, S. Soliman, T. Helikar, A. Niarakis.

    Executable Disease Networks: Adding dynamics to molecular maps, September 2018, ECCB 2018, 17th European Conference on Computational Biology, Poster.

    https://hal.inria.fr/hal-01875418