SERPICO - 2018 - Annual activity report

SERPICO

SERPICO - 2018

Project-Team Serpico

Team, Visitors, External Collaborators

Overall Objectives

Glossary
Scientific context and motivations
Challenges in biological image processing and quantitative microscopy
Objectives of Serpico in cell imaging
Organization and collaborations

Research Program

Statistics and algorithms for computational microscopy
From image data to motion descriptors: trajectory computation and dynamics analysis
Biological and biophysical models and spatial statistics for quantitative bioimaging

Application Domains

Modeling and analysis of membrane transport and molecule trafficking at the single cell scale
Imaging and analysis of cytokskeleton dynamics during cell migration

Highlights of the Year

New Software and Platforms

ATLAS
C-CRAFT
F2D-SAFIR
GcoPS
Hullkground
Motion2D
ND-SAFIR
OWF
QuantEv
TMA-Lib
TOTH
SparseVolution
Platforms

New Results

A Monte-Carlo approach for missing wedge restoration in cryo-electron tomography
Algorithms for deconvolving and denoising fluorescence 2D-3D microsocopy images
Colocalization and co-orientation in fluorescence imaging
Detection of transitions between diffusion models along biomolecule trajectories
Intracellular drift and diffusion coefficient estimation: a trajectory label-based approach
3D flow estimation in 3D fluorescence microscopy image sequences
Connecting trajectories in TIRF images of rod-shaped bacteria
3D registration for correlative light-electron microscopy
3D Convolutional Neural Networks for macromolecule localization in cryo-electron tomograms of intact cells
Data assimilation and modeling of cell division mechanism
Motion saliency in videos

Bilateral Contracts and Grants with Industry

Bilateral grants with industry

Partnerships and Cooperations

Regional Initiatives
National Initiatives
European Initiatives
International Initiatives
International Research Visitors

Dissemination

Promoting Scientific Activities
Teaching - Supervision - Juries

Bibliography

Major publications
Publications of the year
References in notes

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Section: Highlights of the Year

Highlights of the Year

The joint project team Serpico (Inria, CNRS-INSB, Institut Curie, UPMC, PSL Research University) is officially created in 2018.

The Serpico team will be the organizer of the 7th International Conference on “Quantitative BioImaging” (QBI) in January 2019 (300 attendees) in Rennes.

Bertha Mayela Toledo Acosta defended her PhD thesis in 2018.

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