Section: Dissemination

Teaching - Supervision - Juries

Teaching

• Summer school: François Fages (teacher 6h) Modélisation Formelle de Réseaux de Régulation Biologique, Ile de Porquerolles.

• Summer school: Jakob Ruess (teacher 6h) Blackboard course on Optimally learning dynamical models from data at the "Advanced lecture course on computational systems biology" in Aussois, France, April 2019.

• Master: Grégory Batt (coordinator and teacher: 35h) and Jakob Ruess (25h), Computational Biology, M1, Interdisciplinary Approaches to Life Sciences (AIRE-LiSc).

• Master: Grégory Batt (3h) Synthetic Biology and Control course in Molecular and Cellular Biology Sorbonne Université, Paris.

• Master: François Bertaux (co-coordinator and teacher: 20h), Systems Biology, M1, Master Interdisciplinary Approaches to Life Sciences (AIRE-LiSc).

• Master: François Fages (coordinator module 24h and teacher 12h) C2-19 Biochemical Programming, Master Parisien de Recherche en Informatique (MPRI), Paris.

• Master: François Fages (co-coordinator module 36h and teacher 18h) and Sylvain Soliman (co-coordinator, teacher 18h) INF555 - Constraint-based Modeling and Algorithms for Decision Making Problems Master Artificial Intelligence, Ecole Polytechnique.

• Bachelor 3: François Fages (co-coordinator module and teacher 4h30) and Sylvain Soliman (co-coordinator module, teacher 4h30) and Mathieu Hemery (TD 10h) CSE 301b: Constraint Logic Programming.

• Bachelor 2: Eléonore Bellot (teacher 64h) CSE201 Object-oriented Programming in C++ TD and project supervision

• L1: Julien Martinelli (teacher 64h) Mathematics and Calculus, Univ. Paris Descartes

Supervision

• PhD in progress: Chetan Aditya, “Control of heterogenous synthetic microbial systems”, ED FdV, Université Sorbonne Paris Cité, Feb. 2018, Grégory Batt

• PhD in progress: Virgile Andréani, Calibration efficace de modèles de résistance bactérienne aux antibiotiques à l’aide d’un plan d’expériences optimal, ED IPP, Ecole Polytechnique, Sept. 2016, Grégory Batt

• PhD in progress : Eléonore Bellot, “Réduction de modèles différentiels par résolution de contraintes d’algèbre tropicale (min,+)”, ED IPP, Ecole Polytechnique, Sept. 2018, F. Fages & S. Soliman (50-50%)

• PhD in progress: Arthur Carcano, “Iterative design of single-cell experiments to learn single-cell models of biological systems”, ED FdV, Université Sorbonne Paris Cité, Oct. 2018, Jakob Ruess and Grégory Batt

• PhD in progress : Elisabeth Degrand, “Chemical Programming in Non-living Vesicles”, ED IPP, Ecole Polytechnique, Oct. 2019, F. Fages & S. Soliman (50-50%)

• PhD in progress : Jérémy Grignard, “Apprentissage de modèles à partir de données pour la conception d’expériences de criblage et la recherche de médicaments”, ED IPP, Ecole Polytechnique, dec. 2018, F. Fages & T. Dorval, Servier (50-50%)

• PhD in progress : Eléa Greugny, “Development and Implementation of a Mathematical Model of Inflammation in the Human Skin”, ED IPP, Ecole Polytechnique, Aug. 2019, F. Fages & J. Bensaci & G. Stamatas, Johnson&Johnson Santé Beauté France (1/3-2/3))

• PhD in progress : Julien Martinelli, “Apprentissage de modèles mécanistes à partir de données temporelles, application à la personnalisation de la chronothérapie des cancers”, ED IPP, Ecole Polytechnique, Oct. 2018, F. Fages & A. Ballesta, Inserm (50-50%)

• PhD in progress: Sebastian Sosa Carrillo, “Understanding the cost of protein production in yeast”, ED FdV, Université Sorbonne Paris Cité, Feb. 2018, Grégory Batt

• Master's Thesis: Orianne Bargain, “Graph matching, theory and SAT implementation”, TU Dresden, Germany, Sep. 2019, F. Fages & S. Soliman (50-50%)

• Master's Thesis: Elisabeth Degrand, “Evolving Chemical Reaction Networks”, KTH Stockholm, Sweden, June 2019, F. Fages & M. Hemery (50-50%)

Juries

• Grégory Batt participated in the jurys of

  • PhD Antoine Barizien, Ecole Potytechnique and Institut Pasteur, Rapporteur, Paris, May 2019

  • PhD Mathilde Koch, Ecole Polytechnique and INRA, Examinateur, Paris, November 2019

• François Fages participated in the jurys of

  • HDR Sabine Pérès, Université Paris-Saclay, Reviewer, 18 Nov. 2019

  • HDR David Safranek, Mazaryk Univ., Czech Republic Reviewer, July 2019

  • HDR Sriram Krishnamachary, Indraprastha Institute of Information Technology, Delhi, India, Reviewer, April 2019

  • PhD Adrien Husson, Université Paris-Diderot, Rapporteur, 16 Dec. 2019

  • PhD Jorgelindo da Viega Moreira, Université Paris-Saclay, Rapporteur, 18 April 2019

  • Master Thesis, Orianne Bargain, Graph matching, theory and SAT implementation, Technische Universität Dresden, Germany, Superviser October 2019

  • Master Thesis, Zi-Jun Lin, National Taiwan University, Reviewer, July 2019

  • Master Thesis, Wei-Chih Huang, National Taiwan University, Reviewer, July 2019

  • Master Thesis, Elisabeth Degrand, Evolving Chemical Reaction Networks, Kungliga tekniska högskolan, Stockholm, Sweden, Superviser April 2019,