Section: Dissemination
Promoting Scientific Activities
Scientific Events Organisation
Member of the Organizing Committees
Philippe Dague and François Fages were co-organizers of the Workshop on Computational Systems Biology for Cancer CSBC, Institut des Systèmes Complexes, Paris, France, 24-26 jan. 2018.
Scientific Events Selection
Member of the Conference Program Committees
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Gregory Batt was member of the scientific program committee of
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François Fages was member of the program committee of
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VEMDP'18 Verification of Engineered Molecular Devices and Programs. July 19, 2018, Oxford, United Kingdom. An affiliated workshop of CAV 2018.
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CMSB'18 16th International Conference on Computational Methods in Systems Biology. 12th-14th September 2018, Faculty of Informatics, Masaryk University, Brno, CZ.
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MCU'18 8th International Conference on Machines, Computations and Universality, June 28-30, 2018, Fontainebleau, France.
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IJCAR'18 9th International Joint Conference on Automated Reasoning, part of the Federated Logic Conference FLOC'18, July 14-17, 2018, Oxford, UK.
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DataMod'18 7th International Symposium “From Data to Models and Back”, 25-26 June 2018, Toulouse, France
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WCB'18 13th International Workshop on Constraint-based Methods for Bioinformatics, Oxford co-located with FLOC'18, July 2018.
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Reviewer
Journal
Member of the Editorial Boards
Reviewer - Reviewing Activities
In addition to their Editorial Board and Program Committee duties,
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Grégory Batt reviewed journal articles for ACS Synthetic Biology, Cell Systems, Nature Communications, and Current Opinion in Systems Biology;
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François Fages reviewed journal articles for PLOS Computational Biology, Interface Focus, Natural Computing, BMC Systems Biology and the book Automated Reasoning for Systems Biology and Medicine;
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Jakob Ruess reviewed journal articles for PLOS Computational Biology, Journal of Mathematical Biology, Journal of Computational Physics, Processes, and Entropy;
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Sylvain Soliman reviewed journal articles for Journal of Theoretical Biology and Transactions in Computational Biology and Bioinformatics.
Invited Talks
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Virgile Andreani gave an invited talk on Modèles de résistance bactérienne aux antibiotiques to Journée apprentissage de modèles statistiques et stochastiques à partir de données biologiques, Mar 2018, Rennes, France;
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Grégory Batt gave invited talks on
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Balancing a genetic toggle switch by real-time control and periodic stimulations, IEEE Conference on Control Technology and Applications (CCTA 2018), Aug 21-24 2018, Copenhagen, Denmark
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Impact of phenotypic variability on commitment to apoptosis, Computational Systems Biology of Cancer, Sept 2018, Paris
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Balancing a genetic toggle switch by real-time control and periodic stimulations, iSSB / Genoscope seminar, Dec 2018, Evry, France
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François Fages gave invited talks on
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Vers une informatique de la cellule: programmes biochimiques naturels et synthétiques, Conférence de rentrée de l'ENS Paris-Saclay (3h), Sep. 2018;
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Modeling and Design of Biological Systems, Discrete Models and Formal Verification in Biology, Cambridge, UK, août 2018;
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Modeling and Design of Biological Systems, Summer school on New strategies in medical diagnosis and personalized medicine, Ninh Binh, Vietnam, Jul. 2018;
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Computer-Aided Biochemical Programming of Synthetic Micro-reactors as Diagnostic Devices, Groupe de Travail sur la biologie systémique symbolique, GT BIOSS, Marseille, Jul. 2018;
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Turing Completeness of Continuous Chemical Reaction Networks, an Informatic Perspective to Systems Biology and Synthetic Biology, MODELIFE days, Université Provence Alpes Côte d'Azur, Nice, June 2018;
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A Constraint-based Implementation of Tropical Equilibrations in BIOCHAM towards integrating Stability Conditions for Computing Correct Model Reductions, Scientific Meeting, Bonn, Allemagne, March 2018;
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From Turing Completeness of Continuous CRN to Abstract CRN Synthesis Workflow, Formal Methods for the Synthesis of Biomolecular Circuits, Dagstuhl, Allemagne, Feb. 2018;
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Coupled Models of the Cell Cycle and Circadian Clock for Chronotherapy Optimization, Computational Systems Biology for Cancer, Paris, Jan. 2018.
Jakob Ruess gave invited talks on
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Virtual reality for bacteria, C3BI Seminar, Feb 2018, Paris, France.
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Shaping bacterial population behavior through computer-interfaced control of individual cells, Symposium on "Cybergenetics-at the interface between living and non-living regulatory systems" at the Annual Meeting of the German Association for General and Applied Microbiology (VAAM), Apr 2018, Wolfsburg, Germany.
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Leadership within the Scientific Community
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co-responsible of the working group on Symbolic Systems Biology (GT Bioss), gathering >150 researchers in 25 research teams; and member of
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the Technical Committee on Systems Biology of IEEE and CSS societies;
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the scientific board of the French research network on Systems and Synthetic Biology (GdR BioSynSys), gathering 40 labs and 300 researchers;
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the scientific board of the French research network on Bioinformatics (GdR BIM), gathering 56 labs and several hundreds of researchers;
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the scientific committee of the Advanced Course on Computational Systems Biology summer school, Aussois, 2019;
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the scientific committee of the Curie International Course on Systems Biology of Cancer, Paris, 2018.
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the Steering Committee of the International Conference on Computational Methods in Systems Biology, CMSB, since 2008.
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the Think Tank of the structuring program MODELIFE “Modélisation physique et Mathématique du vivant”, Université Provence Alpes Côte d'Azur.
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Scientific Expertise
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was responsible for the Predictive Systems Biology chapter of the 2018-2022 strategic plan of Inria;
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was reviewer and panel member of the ITMO Cancer/Inserm call on single-cell approaches to cancer;
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and reviewer for the MIT International Science & Technology Initiatives (MISTI) Global Seed Funds and for the Leverhulme Trust.
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Jakob Ruess has been a member of thesis advisory committee for two PhD students.