Section: Dissemination

Teaching

Our research work finds also its expression in a strong commitment in pedagogical activities at the University Lille 1. For several years, members of the project have been playing a leading role in the development and the promotion of bioinformatics (more than 400 teaching hours per year). We are involved in several graduate diplomas (research master degree) in computer science and biology (master biologie-santé, master génomique et protéomique, master biologie-biotechnologie) in an Engineering School (Polytech'Lille), as well as in permanent education (for researchers, engineers and technicians).

Licence (bachelor)

Teaching in computer science (University of Lille 1, unless otherwise stated)

• Programming (OCaml), 50h, L2 (second year of bachelor) (J.-S. Varré)

• Algorithms (Ada), 58h, L3 (third year of bachelor) (L. Noé)

• Networks, 36h, L3 (third year of bachelor) (L. Noé)

• System, 36h, L3 (third year of bachelor) (L. Noé)

• Algorithms and Data Structures, 60h, L3 (third year of bachelor) (J.-S. Varré)

• Introduction to Programming (OCaml), 54h, L1 (first year of bachelor) (M. Salson)

• Coding and information theory, 36h, L2 (second year of bachelor) (M. Salson)

• C programming, 42h, L3 (third year of bachelor) (M. Salson)

• Imperative Programming, 48h, L1 (first year of bachelor) (M. Giraud)

• Computation and Architecture, 36h, L1 (first year of bachelor) (M. Giraud, Univ. cath. of Lille)

• Introduction to programming, 50h, first year of engineering school (L3) (S. Janot)

• Introduction to Databases, 30h, first year of engineering school (L3) (S. Janot)

• Programming (OCaml), 36h, L1 (first year of bachelor) (M. Pupin)

• Professional project, 18h, L3 (third year of bachelor) (M. Pupin)

• Algorithmics, second year of bachelor, 30h, L2 (second year of bachelor) (A. Saffarian)

Master

Lectures on bioinformatics, University of Lille 1.

• Bioinformatics, 54h, M1 (first year of master in genomics and proteomics) (L. Noé)

• Bioinformatics, 24h, M1 (first year of master in genomics and microbiology) (A. Ouangraoua)

• Bioinformatics, 36h, M2 (second year of master in cellular and molecular engineering) (J.-S. Varré)

• Applications and Algorithms in bioinformatics, 21h, M1 (first year of master in computer science) (S. Blanquart)

• Introduction to Programming (JAVA), 30h, M1 (first year of master) (M. Pupin)

• Individual project, organiser, M1 (fisrt year of master in computer science) (L. Noé)

• Databases, 12h, second year of engineering school (M1) (S. Janot)

• Introduction to Artificial Intelligence, 25h, second year of engineering school (M1) (S. Janot)

• Artificial Intelligence and Constraint programming, 25h, third year of engineering school (M2) (S. Janot)

• Final project, organiser, third year of engineering school (M2) (S. Janot)

PhD

• Azadeh Saffarian, Prediction and pattern matching algorithms for RNA multi-structures, Université Lille 1, November 16, 2011, co-directed by H. Touzet and M. Giraud.

• Tuan Tu Tran, Massively parallel algorithms and data structures for bioinformatics, Université Lille 1, in progress, co-directed by J-S. Varré and M. Giraud.

• Antoine Thomas, Algorithms for genome rearrangement with duplications, Université Lille 1, in progress, co-directed by J-S. Varré and A. Ouangraoua.

• Evguenia Kopylova, New algorithmic and bioinformatic approaches for the analysis of data from next-generation sequencing, Université Lille 1, in progress, co-directed by H. Touzet and L. Noé.